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Update pinnings for methyldackel, metilene, and ucsc-facount #13633

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dpryan79
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@dpryan79 dpryan79 commented Feb 13, 2019

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Bioconda has finished the GCC7 migration. If you are dealing with C/C++ or Python package it can be that you need to rebuild other dependent packages. Bioconda utils - update-pinning will assist you with that. If you have any questions please use issue 13578.


  • I have read the guidelines for bioconda recipes.
  • This PR adds a new recipe.
  • AFAIK, this recipe is directly relevant to the biological sciences (otherwise, please submit to the more general purpose conda-forge channel).
  • This PR updates an existing recipe.
  • This PR does something else (explain below).

@bgruening
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@daler we need to rebuild all UCSC packages against the new compiler-stack. Do you think a general upgrade would be worthwhile instead of rebuilding the old once?

@daler
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daler commented Feb 20, 2019

I'm slow, sorry -- yes, I think an upgrade would be much better. I don't think they've been upgraded in a while.

@dpryan79
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The last time was probably during the CB3 change. I'll merge an update into bulk.

@dpryan79
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Now that the UCSC tools have been updated I'll start this PR fresh.

@dpryan79 dpryan79 closed this Feb 25, 2019
@dpryan79 dpryan79 deleted the snakepipes_wgbs branch February 25, 2019 19:50
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