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a few updates #12923
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a few updates #12923
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,2 @@ | ||
| "%R%" CMD INSTALL --build . | ||
| IF %ERRORLEVEL% NEQ 0 exit 1 |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,33 @@ | ||
| if [[ $target_platform =~ linux.* ]] || [[ $target_platform == win-32 ]] || [[ $target_platform == win-64 ]] || [[ $target_platform == osx-64 ]]; then | ||
| export DISABLE_AUTOBREW=1 | ||
| $R CMD INSTALL --build . | ||
| else | ||
| mkdir -p $PREFIX/lib/R/library/MESS | ||
| mv * $PREFIX/lib/R/library/MESS | ||
| if [[ $target_platform == osx-64 ]]; then | ||
| pushd $PREFIX | ||
| for libdir in lib/R/lib lib/R/modules lib/R/library lib/R/bin/exec sysroot/usr/lib; do | ||
| pushd $libdir || exit 1 | ||
| for SHARED_LIB in $(find . -type f -iname "*.dylib" -or -iname "*.so" -or -iname "R"); do | ||
| echo "fixing SHARED_LIB $SHARED_LIB" | ||
| install_name_tool -change /Library/Frameworks/R.framework/Versions/3.5.0-MRO/Resources/lib/libR.dylib "$PREFIX"/lib/R/lib/libR.dylib $SHARED_LIB || true | ||
| install_name_tool -change /Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libR.dylib "$PREFIX"/lib/R/lib/libR.dylib $SHARED_LIB || true | ||
| install_name_tool -change /usr/local/clang4/lib/libomp.dylib "$PREFIX"/lib/libomp.dylib $SHARED_LIB || true | ||
| install_name_tool -change /usr/local/gfortran/lib/libgfortran.3.dylib "$PREFIX"/lib/libgfortran.3.dylib $SHARED_LIB || true | ||
| install_name_tool -change /Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libquadmath.0.dylib "$PREFIX"/lib/libquadmath.0.dylib $SHARED_LIB || true | ||
| install_name_tool -change /usr/local/gfortran/lib/libquadmath.0.dylib "$PREFIX"/lib/libquadmath.0.dylib $SHARED_LIB || true | ||
| install_name_tool -change /Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgfortran.3.dylib "$PREFIX"/lib/libgfortran.3.dylib $SHARED_LIB || true | ||
| install_name_tool -change /usr/lib/libgcc_s.1.dylib "$PREFIX"/lib/libgcc_s.1.dylib $SHARED_LIB || true | ||
| install_name_tool -change /usr/lib/libiconv.2.dylib "$PREFIX"/sysroot/usr/lib/libiconv.2.dylib $SHARED_LIB || true | ||
| install_name_tool -change /usr/lib/libncurses.5.4.dylib "$PREFIX"/sysroot/usr/lib/libncurses.5.4.dylib $SHARED_LIB || true | ||
| install_name_tool -change /usr/lib/libicucore.A.dylib "$PREFIX"/sysroot/usr/lib/libicucore.A.dylib $SHARED_LIB || true | ||
| install_name_tool -change /usr/lib/libexpat.1.dylib "$PREFIX"/lib/libexpat.1.dylib $SHARED_LIB || true | ||
| install_name_tool -change /usr/lib/libcurl.4.dylib "$PREFIX"/lib/libcurl.4.dylib $SHARED_LIB || true | ||
| install_name_tool -change /usr/lib/libc++.1.dylib "$PREFIX"/lib/libc++.1.dylib $SHARED_LIB || true | ||
| install_name_tool -change /Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libc++.1.dylib "$PREFIX"/lib/libc++.1.dylib $SHARED_LIB || true | ||
| done | ||
| popd | ||
| done | ||
| popd | ||
| fi | ||
| fi |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,59 @@ | ||
| {% set version = '0.5.4' %} | ||
| {% set posix = 'm2-' if win else '' %} | ||
| {% set native = 'm2w64-' if win else '' %} | ||
|
|
||
| package: | ||
| name: r-mess | ||
| version: {{ version|replace("-", "_") }} | ||
|
|
||
| source: | ||
| url: | ||
| - {{ cran_mirror }}/src/contrib/MESS_{{ version }}.tar.gz | ||
| - {{ cran_mirror }}/src/contrib/Archive/MESS/MESS_{{ version }}.tar.gz | ||
| sha256: f49f870729030945ff672f7fac4a0b2e7d71e9c61537dd1d732449cead160984 | ||
|
|
||
| build: | ||
| number: 0 | ||
| rpaths: | ||
| - lib/R/lib/ | ||
| - lib/ | ||
|
|
||
| requirements: | ||
| build: | ||
| - {{ compiler('c') }} | ||
| - {{ compiler('cxx') }} | ||
| - {{posix}}make | ||
| host: | ||
| - r-base | ||
| - r-mass | ||
| - r-matrix | ||
| - r-rcpp | ||
| - r-rcpparmadillo | ||
| - r-geem | ||
| - r-geepack | ||
| - r-glmnet | ||
| - r-kinship2 | ||
| - r-mvtnorm | ||
| run: | ||
| - r-base | ||
| - r-mass | ||
| - r-matrix | ||
| - r-rcpp | ||
| - r-rcpparmadillo | ||
| - r-geem | ||
| - r-geepack | ||
| - r-glmnet | ||
| - r-kinship2 | ||
| - r-mvtnorm | ||
|
|
||
| test: | ||
| commands: | ||
| - $R -e "library('MESS')" | ||
|
|
||
| about: | ||
| home: https://github.com/ekstroem/MESS | ||
| license: GPL-2 | ||
| summary: A mixed collection of useful and semi-useful diverse statistical functions, some of | ||
| which may even be referenced in The R Primer book. | ||
| license_family: GPL2 | ||
| license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-2' | ||
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conda-forge?
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It's from the wrapper script, yes.
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No I mean should this go to conda-forge :)
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It has requirements in bioconda (r-kinship2), so no.
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Mh, this will bite us sooner or later. Another example where it would be better to move all r-* packages which have no bioconductor dependencies into conda-forge.