add r-diffcorr and update blacklist

build-fail-blacklist

@@ -934,11 +934,16 @@ recipes/bioconductor-madseq
 recipes/bioconductor-doqtl
 
 # Waiting on gcc7 builds of deps
-recipes/bioconductor-biocancer
+# recipes/bioconductor-biocancer
+
+# Not enough memory on circleci
+recipes/bioconductor-conumee
+recipes/bioconductor-remp
 
 # JVM errors
 recipes/bioconductor-rgmql
 recipes/bioconductor-camthc
 recipes/bioconductor-onassis
 recipes/bioconductor-cbaf
 recipes/bioconductor-esatac
+recipes/bioconductor-arrayexpresshts

recipes/r-diffcorr/build.sh

@@ -0,0 +1,33 @@
+if [[ $target_platform =~ linux.* ]] || [[ $target_platform == win-32 ]] || [[ $target_platform == win-64 ]] || [[ $target_platform == osx-64 ]]; then
+  export DISABLE_AUTOBREW=1
+  $R CMD INSTALL --build .
+else
+  mkdir -p $PREFIX/lib/R/library/DiffCorr
+  mv * $PREFIX/lib/R/library/DiffCorr
+  if [[ $target_platform == osx-64 ]]; then
+    pushd $PREFIX
+      for libdir in lib/R/lib lib/R/modules lib/R/library lib/R/bin/exec sysroot/usr/lib; do
+        pushd $libdir || exit 1
+          for SHARED_LIB in $(find . -type f -iname "*.dylib" -or -iname "*.so" -or -iname "R"); do
+            echo "fixing SHARED_LIB $SHARED_LIB"
+            install_name_tool -change /Library/Frameworks/R.framework/Versions/3.5.0-MRO/Resources/lib/libR.dylib "$PREFIX"/lib/R/lib/libR.dylib $SHARED_LIB || true
+            install_name_tool -change /Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libR.dylib "$PREFIX"/lib/R/lib/libR.dylib $SHARED_LIB || true
+            install_name_tool -change /usr/local/clang4/lib/libomp.dylib "$PREFIX"/lib/libomp.dylib $SHARED_LIB || true
+            install_name_tool -change /usr/local/gfortran/lib/libgfortran.3.dylib "$PREFIX"/lib/libgfortran.3.dylib $SHARED_LIB || true
+            install_name_tool -change /Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libquadmath.0.dylib "$PREFIX"/lib/libquadmath.0.dylib $SHARED_LIB || true
+            install_name_tool -change /usr/local/gfortran/lib/libquadmath.0.dylib "$PREFIX"/lib/libquadmath.0.dylib $SHARED_LIB || true
+            install_name_tool -change /Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgfortran.3.dylib "$PREFIX"/lib/libgfortran.3.dylib $SHARED_LIB || true
+            install_name_tool -change /usr/lib/libgcc_s.1.dylib "$PREFIX"/lib/libgcc_s.1.dylib $SHARED_LIB || true
+            install_name_tool -change /usr/lib/libiconv.2.dylib "$PREFIX"/sysroot/usr/lib/libiconv.2.dylib $SHARED_LIB || true
+            install_name_tool -change /usr/lib/libncurses.5.4.dylib "$PREFIX"/sysroot/usr/lib/libncurses.5.4.dylib $SHARED_LIB || true
+            install_name_tool -change /usr/lib/libicucore.A.dylib "$PREFIX"/sysroot/usr/lib/libicucore.A.dylib $SHARED_LIB || true
+            install_name_tool -change /usr/lib/libexpat.1.dylib "$PREFIX"/lib/libexpat.1.dylib $SHARED_LIB || true
+            install_name_tool -change /usr/lib/libcurl.4.dylib "$PREFIX"/lib/libcurl.4.dylib $SHARED_LIB || true
+            install_name_tool -change /usr/lib/libc++.1.dylib "$PREFIX"/lib/libc++.1.dylib $SHARED_LIB || true
+            install_name_tool -change /Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libc++.1.dylib "$PREFIX"/lib/libc++.1.dylib $SHARED_LIB || true
+          done
+        popd
+      done
+    popd
+  fi
+fi

recipes/r-diffcorr/meta.yaml

@@ -0,0 +1,55 @@
+{% set version = '0.4.1' %}
+{% set posix = 'm2-' if win else '' %}
+{% set native = 'm2w64-' if win else '' %}
+
+package:
+  name: r-diffcorr
+  version: {{ version|replace("-", "_") }}
+
+source:
+  url:
+    - {{ cran_mirror }}/src/contrib/DiffCorr_{{ version }}.tar.gz
+    - {{ cran_mirror }}/src/contrib/Archive/DiffCorr/DiffCorr_{{ version }}.tar.gz
+  sha256: 15125ae871949ef2be89916384e46c665079e6826ecbba6b3608701e574bb7cf
+
+build:
+  merge_build_host: True  # [win]
+  number: 0
+  noarch: generic
+  rpaths:
+    - lib/R/lib/
+    - lib/
+
+requirements:
+  build:
+
+  host:
+    - r-base
+    - r-fdrtool
+    - r-igraph
+    - r-multtest
+    - r-pcamethods
+  run:
+    - r-base
+    - r-fdrtool
+    - r-igraph
+    - r-multtest
+    - r-pcamethods
+
+test:
+  commands:
+    - $R -e "library('DiffCorr')"           # [not win]
+    - "\"%R%\" -e \"library('DiffCorr')\""  # [win]
+
+about:
+  home: https://CRAN.R-project.org/package=DiffCorr
+  license: GPL (> 3)
+  summary: 'A method for identifying pattern changes between 2 experimental conditions in correlation
+    networks (e.g., gene co-expression networks), which builds on a commonly used association
+    measure, such as Pearson''s correlation coefficient. This package includes functions
+    to calculate correlation matrices for high-dimensional dataset and to test differential
+    correlation, which means the changes in the correlation relationship among variables
+    (e.g., genes and metabolites) between 2 experimental conditions. '
+  license_family: GPL3
+  license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'  # [unix]
+  license_file: '{{ environ["PREFIX"] }}\R\share\licenses\GPL-3'  # [win]