VEP: bump major version (#11201)

* VEP: bump major version * VEP: bumped plugin major version * VEP: update plugin install Download and install all plugin modules, instead of just a selection
bioconda · Oct 3, 2018 · c0d112f · c0d112f
1 parent da34d23
commit c0d112f
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Showing 2 changed files with 11 additions and 10 deletions.
diff --git a/recipes/ensembl-vep/build.sh b/recipes/ensembl-vep/build.sh
@@ -1,7 +1,7 @@
 #!/bin/bash
 export C_INCLUDE_PATH=$PREFIX/include
 target=$PREFIX/share/$PKG_NAME-$PKG_VERSION-$PKG_BUILDNUM
-version=93
+version=94
 mkdir -p $target
 mkdir -p $PREFIX/bin
 
@@ -36,13 +36,14 @@ vep_install -a a --NO_HTSLIB --NO_TEST --NO_BIOPERL --NO_UPDATE
 rm -rf t/
 
 # Install plugins
-curl -ks -o CADD.pm https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/$version/CADD.pm
-curl -ks -o dbNSFP.pm https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/$version/dbNSFP.pm
-curl -ks -o MaxEntScan.pm https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/$version/MaxEntScan.pm
-curl -ks -o SpliceRegion.pm https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/$version/SpliceRegion.pm
-curl -ks -o GeneSplicer.pm https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/$version/GeneSplicer.pm
-curl -ks -o dbscSNV.pm https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/$version/dbscSNV.pm
-curl -L -ks -o loftee.tar.gz https://github.com/konradjk/loftee/archive/f6789b9.tar.gz
+curl -L -ks -o VEP_plugins.tar.gz https://github.com/Ensembl/VEP_plugins/archive/release/$version.tar.gz
+tar -xzvpf VEP_plugins.tar.gz
+mv VEP_plugins*/*.pm .
+mv VEP_plugins*/config .
+rm -rf VEP_plugins*
+
+# Install loftee
+curl -L -ks -o loftee.tar.gz https://github.com/konradjk/loftee/archive/df3d29e.tar.gz
 tar -xzvpf loftee.tar.gz
 mv loftee-*/*.pl .
 mv loftee-*/*.pm .

diff --git a/recipes/ensembl-vep/meta.yaml b/recipes/ensembl-vep/meta.yaml
@@ -1,12 +1,12 @@
-{% set version="93.4" %}
+{% set version="94.0" %}
 
 package:
   name: ensembl-vep
   version: {{ version }}
 
 source:
   url: https://github.com/Ensembl/ensembl-vep/archive/release/{{ version }}.tar.gz
-  sha256: a760567264f1e7df50639cc8e6f736d9509531c2bf281877a9d28dd6410d4507
+  sha256: 194a3b6bd963758513c68fea019f937c6ee3572e4d36309905a930d60673e425
 
 build:
   number: 0