Bulk update 130119c (#13062)

* Update a few recipes * These will fail
bioconda · Jan 13, 2019 · 9590c99 · 9590c99
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commit 9590c99
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diff --git a/build-fail-blacklist b/build-fail-blacklist
@@ -860,24 +860,6 @@ recipes/bioconductor-confess
 recipes/bioconductor-flowtype
 recipes/bioconductor-rchyoptimyx
 
-# some weird test error in Docker (The following specifications were found to be in conflict)
-# recipes/bioconductor-iwtomics
-# recipes/bioconductor-narrowpeaks
-# recipes/bioconductor-nethet
-# recipes/bioconductor-funchip
-# recipes/bioconductor-fccac
-# recipes/bioconductor-rqt
-# recipes/bioconductor-ping
-# recipes/bioconductor-fourcseq
-# recipes/bioconductor-frgepistasis
-# recipes/bioconductor-flowstats
-
-# Depend on bioconductor-flowstats
-# recipes/bioconductor-flowvs
-# recipes/bioconductor-opencyto
-# recipes/bioconductor-cytoml
-# recipes/bioconductor-platecore
-
 # system call failed: Cannot allocate memory
 recipes/bioconductor-conumee
 
@@ -965,28 +947,28 @@ recipes/bioconductor-ampliqueso
 recipes/bioconductor-icheck
 
 # Compilation errors (and dependencies)
-recipes/bioconductor-bgmix
-recipes/bioconductor-singlecelltk
-recipes/bioconductor-philr
-recipes/bioconductor-chemmineob
-recipes/bioconductor-flipflop
-recipes/bioconductor-hilbertvisgui
-recipes/bioconductor-rsbml
-recipes/bioconductor-universalmotif
-recipes/bioconductor-linc
-recipes/bioconductor-bgx
-recipes/bioconductor-iclusterplus
-recipes/bioconductor-explorase
-recipes/bioconductor-lymphoseq
-recipes/bioconductor-biggr
-recipes/bioconductor-ibmq
-recipes/bioconductor-sictools
-recipes/bioconductor-dsimer
-recipes/bioconductor-interactivedisplay
-recipes/bioconductor-post
-recipes/bioconductor-glad
-recipes/bioconductor-italics
-recipes/bioconductor-snapcgh
-recipes/bioconductor-adacgh2
-recipes/bioconductor-manor
-recipes/bioconductor-seqcna
+# recipes/bioconductor-bgmix
+# recipes/bioconductor-singlecelltk
+# recipes/bioconductor-philr
+# recipes/bioconductor-chemmineob
+# recipes/bioconductor-flipflop
+# recipes/bioconductor-hilbertvisgui
+# recipes/bioconductor-rsbml
+# recipes/bioconductor-universalmotif
+# recipes/bioconductor-linc
+# recipes/bioconductor-bgx
+# recipes/bioconductor-iclusterplus
+# recipes/bioconductor-explorase
+# recipes/bioconductor-lymphoseq
+# recipes/bioconductor-biggr
+# recipes/bioconductor-ibmq
+# recipes/bioconductor-sictools
+# recipes/bioconductor-dsimer
+# recipes/bioconductor-interactivedisplay
+# recipes/bioconductor-post
+# recipes/bioconductor-glad
+# recipes/bioconductor-italics
+# recipes/bioconductor-snapcgh
+# recipes/bioconductor-adacgh2
+# recipes/bioconductor-manor
+# recipes/bioconductor-seqcna
diff --git a/recipes/bioconductor-cytoml/meta.yaml b/recipes/bioconductor-cytoml/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "1.8.0" %}
+{% set version = "1.8.1" %}
 {% set name = "CytoML" %}
 {% set bioc = "3.8" %}
 
@@ -10,7 +10,7 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: a48283d851e9a8667be67d5c665c85f8
+  md5: 9be209a388efba16dd699e4c85542c51
 build:
   number: 0
   rpaths:
@@ -60,4 +60,9 @@ about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
   license: Artistic-2.0
   summary: 'Uses platform-specific implemenations of the GatingML2.0 standard to exchange gated cytometry data with other software platforms.'
+extra:
+  parent_recipe:
+    name: bioconductor-cytoml
+    path: recipes/bioconductor-cytoml
+    version: 1.8.0
 
diff --git a/recipes/bioconductor-flowvs/meta.yaml b/recipes/bioconductor-flowvs/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "1.14.0" %}
+{% set version = "1.14.1" %}
 {% set name = "flowVS" %}
 {% set bioc = "3.8" %}
 
@@ -10,7 +10,7 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 11621c551d9f8e4688c0861206ee2564
+  md5: a1f53e1a4431e5172e5ca33be1584e08
 build:
   number: 0
   rpaths:
@@ -36,4 +36,9 @@ about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
   license: Artistic-2.0
   summary: 'Per-channel variance stabilization from a collection of flow cytometry samples by Bertlett test for homogeneity of variances. The approach is applicable to microarrays data as well.'
+extra:
+  parent_recipe:
+    name: bioconductor-flowvs
+    path: recipes/bioconductor-flowvs
+    version: 1.14.0
 
diff --git a/recipes/bioconductor-opencyto/meta.yaml b/recipes/bioconductor-opencyto/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "1.20.0" %}
+{% set version = "1.20.1" %}
 {% set name = "openCyto" %}
 {% set bioc = "3.8" %}
 
@@ -10,7 +10,7 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: 36812f18ed317a05afae096aa98cea5f
+  md5: dbf8ed0437f362f3949f1c7180b836a7
 build:
   number: 0
   rpaths:
@@ -75,4 +75,9 @@ about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
   license: Artistic-2.0
   summary: 'This package is designed to facilitate the automated gating methods in sequential way to mimic the manual gating strategy.'
+extra:
+  parent_recipe:
+    name: bioconductor-opencyto
+    path: recipes/bioconductor-opencyto
+    version: 1.20.0
 
diff --git a/recipes/bioconductor-platecore/meta.yaml b/recipes/bioconductor-platecore/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "1.40.0" %}
+{% set version = "1.40.1" %}
 {% set name = "plateCore" %}
 {% set bioc = "3.8" %}
 
@@ -10,7 +10,7 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
-  md5: adfe7d777974de196346e991bae587f1
+  md5: 59e976ddf32e8638605cf80e898752d7
 build:
   number: 0
   rpaths:
@@ -46,4 +46,9 @@ about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
   license: Artistic-2.0
   summary: 'Provides basic S4 data structures and routines for analyzing plate based flow cytometry data.'
+extra:
+  parent_recipe:
+    name: bioconductor-platecore
+    path: recipes/bioconductor-platecore
+    version: 1.40.0