AMPtk v1.3.0 release (#13553)

* amptk v1.3.0 update * detab post link msg * spaces in post-link.sh * clean up the blacklist a bit
bioconda · Feb 8, 2019 · 85c86ce · 85c86ce
1 parent 1f8ed0a
commit 85c86ce
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diff --git a/build-fail-blacklist b/build-fail-blacklist
@@ -408,9 +408,6 @@ recipes/snvphyl-tools
 # missing perl module
 recipes/snippy/3.0
 
-# is running forever?
-recipes/amptk
-
 # hashFunction.c:94: Error: invalid instruction suffix for `push'
 recipes/soapdenovo2
 

diff --git a/recipes/amptk/build.sh b/recipes/amptk/build.sh
diff --git a/recipes/amptk/meta.yaml b/recipes/amptk/meta.yaml
@@ -1,19 +1,34 @@
-{% set version = "1.2.4" %}
+{% set name = "amptk" %}
+{% set version = "1.3.0" %}
 
 package:
-  name: amptk
-  version: {{ version }}
+  name: "{{ name|lower }}"
+  version: "{{ version }}"
 
 source:
-  url: https://github.com/nextgenusfs/amptk/archive/{{ version }}.tar.gz
-  sha256: b99478a7392d4923a2ecfe175d4f6ac93e84f3b3193ab214d399d7c073b7c615
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
+  sha256: bb9b406c98685b446bd85c9377ce974b709e789165aff82a2ab9454c2e5c4bdb
 
 build:
-  number: 1
+  number: 0
+  noarch: python
+  script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed -vvv "
 
 requirements:
+  host:
+    - biom-format
+    - biopython
+    - python-edlib >=1.2.1
+    - matplotlib
+    - natsort
+    - numpy
+    - pandas
+    - pip
+    - psutil
+    - python >=2.7
+    - seaborn
   run:
-    - python
+    - python >=2.7
     - biopython
     - psutil
     - python-edlib >=1.2.1
@@ -27,17 +42,22 @@ requirements:
     - r-base
     - bioconductor-dada2 >=1.4
     - bioconductor-phyloseq
+    - r-plotly
+    - r-htmltools
+    - r-dt
     - pigz
 
 test:
-  commands:
-    - amptk version
+  imports:
+    - amptk
 
 about:
   home: https://github.com/nextgenusfs/amptk
-  license: BSD 2-Clause
-  license_file: LICENSE.md
+  license: BSD-2
   license_family: BSD
+  license_file: LICENSE.md
+  summary: 'AMPtk: amplicon tool kit'
+  doc_url: http://amptk.readthedocs.io/
   summary: 'AMPtk: Amplicon tool kit for processing high throughput amplicon sequencing data.'
 
 extra:

diff --git a/recipes/amptk/post-link.sh b/recipes/amptk/post-link.sh
@@ -0,0 +1,16 @@
+#!/usr/bin/env bash
+
+cat > "${PREFIX}"/.messages.txt <<- EOF
+    
+    ##############################################################################
+    #                                                                            #
+    #   Note: while Conda has installed AMPtk and all of its depenencies that    #
+    #      it can, you will still need to download the usearch9 and usearch10    #
+    #      binaries and make sure they are in your PATH. They should be          #
+    #      softlinked to usearch9 and usearch10 respectively, i.e.               #
+    #                                                                            #
+    #      chmod +x /path/to/usearch9.2.64_i86osx32                              #
+    #      ln -s /path/to/usearch9.2.64_i86osx32 /usr/local/bin/usearch9         #
+    #                                                                            #
+    ##############################################################################
+EOF