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Try removing a few from the blacklist (#13053)
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dpryan79 authored Jan 11, 2019
1 parent 2812eae commit 5c8d1e3
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93 changes: 43 additions & 50 deletions build-fail-blacklist
Original file line number Diff line number Diff line change
Expand Up @@ -849,28 +849,13 @@ recipes/bioconductor-xcms/1.52.0
recipes/bioconductor-primirtss

# new bioconductor blacklist
# recipes/bioconductor-dapar
# recipes/bioconductor-prostar
# recipes/bioconductor-sictools
# recipes/bioconductor-chrogps
# recipes/bioconductor-cytodx
# recipes/bioconductor-flowfit
# recipes/bioconductor-phantasus
# recipes/bioconductor-chic
# recipes/bioconductor-rcpi
# recipes/bioconductor-dsimer
# recipes/bioconductor-pga
# recipes/bioconductor-fourcseq
# recipes/bioconductor-post
# recipes/bioconductor-interactivedisplay
# recipes/bioconductor-prostar

# r-dagitity missing -> missing of V8 in cf
recipes/r-pcalg
recipes/bioconductor-epinem

# R clusterr GCC7 builds missing
# recipes/bioconductor-edge

# r-xlconnect missing
recipes/bioconductor-hpaanalyze

Expand All @@ -896,42 +881,44 @@ recipes/bioconductor-cytoml
recipes/bioconductor-platecore
recipes/bioconductor-ping
recipes/bioconductor-frgepistasis
recipes/bioconductor-fourcseq

# missing r-* deps
recipes/bioconductor-mcagui
recipes/bioconductor-mapkl
recipes/bioconductor-gqtlstats
recipes/bioconductor-gwascat
recipes/bioconductor-vtpnet
recipes/bioconductor-r3cpet
recipes/bioconductor-omicspca
recipes/bioconductor-madseq
recipes/bioconductor-doqtl
recipes/bioconductor-debrowser
recipes/r-xgr
recipes/bioconductor-pi
recipes/bioconductor-glad
recipes/bioconductor-italics
recipes/bioconductor-snapcgh
recipes/bioconductor-adacgh2
recipes/bioconductor-manor
recipes/bioconductor-seqcna
recipes/bioconductor-ampliqueso
recipes/bioconductor-slingshot
recipes/bioconductor-moonlightr
recipes/bioconductor-fci
recipes/bioconductor-easyqpcr
recipes/bioconductor-powertcr
recipes/bioconductor-rdrtoolbox
recipes/bioconductor-bprmeth
recipes/bioconductor-plotgrouper
recipes/r-dartr
recipes/r-qpcr
recipes/bioconductor-normqpcr
recipes/bioconductor-flowqb
recipes/bioconductor-icheck
recipes/bioconductor-idmappinganalysis
recipes/r-phytools
# recipes/bioconductor-mcagui
# recipes/bioconductor-mapkl
# recipes/bioconductor-gqtlstats
# recipes/bioconductor-gwascat
# recipes/bioconductor-vtpnet
# recipes/bioconductor-r3cpet
# recipes/bioconductor-omicspca
# recipes/bioconductor-madseq
# recipes/bioconductor-doqtl
# recipes/bioconductor-debrowser
# recipes/r-xgr
# recipes/bioconductor-pi
# recipes/bioconductor-glad
# recipes/bioconductor-italics
# recipes/bioconductor-snapcgh
# recipes/bioconductor-adacgh2
# recipes/bioconductor-manor
# recipes/bioconductor-seqcna
# recipes/bioconductor-ampliqueso
# recipes/bioconductor-slingshot
# recipes/bioconductor-moonlightr
# recipes/bioconductor-fci
# recipes/bioconductor-easyqpcr
# recipes/bioconductor-powertcr
# recipes/bioconductor-rdrtoolbox
# recipes/bioconductor-bprmeth
# recipes/bioconductor-plotgrouper
# recipes/r-dartr
# recipes/r-qpcr
# recipes/bioconductor-normqpcr
# recipes/bioconductor-flowqb
# recipes/bioconductor-icheck
# recipes/bioconductor-idmappinganalysis
# recipes/r-phytools
recipes/r-ggrasp

# Not enough memory on circleci
recipes/bioconductor-conumee
Expand Down Expand Up @@ -964,6 +951,7 @@ recipes/bioconductor-rmassbank
recipes/bioconductor-reqon
recipes/bioconductor-rcellminer
recipes/bioconductor-goprofiles
recipes/bioconductor-rcpi

# Missing root dependency
recipes/bioconductor-xps
Expand All @@ -984,6 +972,7 @@ recipes/bioconductor-flipflop
recipes/bioconductor-hilbertvisgui
recipes/bioconductor-rsbml
recipes/bioconductor-rtandem
recipes/bioconductor-pga
recipes/bioconductor-proteoqc
recipes/bioconductor-shinytandem
recipes/bioconductor-sapfinder
Expand All @@ -995,3 +984,7 @@ recipes/bioconductor-explorase
recipes/bioconductor-lymphoseq
recipes/bioconductor-biggr
recipes/bioconductor-ibmq
recipes/bioconductor-sictools
recipes/bioconductor-dsimer
recipes/bioconductor-interactivedisplay
recipes/bioconductor-post
9 changes: 7 additions & 2 deletions recipes/bioconductor-phantasus/meta.yaml
Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
{% set version = "1.2.0" %}
{% set version = "1.2.1" %}
{% set name = "phantasus" %}
{% set bioc = "3.8" %}

Expand All @@ -10,7 +10,7 @@ source:
- 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
- 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
- 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
md5: 6f759d524b532e8ff5d11ea068193449
md5: 990d22722534910c8d036c0d78ba4692
build:
number: 0
rpaths:
Expand Down Expand Up @@ -74,4 +74,9 @@ about:
home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
license: 'MIT + file LICENSE'
summary: 'Phantasus is a web-application for visual and interactive gene expression analysis. Phantasus is based on Morpheus – a web-based software for heatmap visualisation and analysis, which was integrated with an R environment via OpenCPU API. Aside from basic visualization and filtering methods, R-based methods such as k-means clustering, principal component analysis or differential expression analysis with limma package are supported.'
extra:
parent_recipe:
name: bioconductor-phantasus
path: recipes/bioconductor-phantasus
version: 1.2.0

9 changes: 7 additions & 2 deletions recipes/bioconductor-prostar/meta.yaml
Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
{% set version = "1.14.7" %}
{% set version = "1.14.8" %}
{% set name = "Prostar" %}
{% set bioc = "3.8" %}

Expand All @@ -10,7 +10,7 @@ source:
- 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
- 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
- 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
md5: c02426ae8669501c780f1ca321630701
md5: 013d81f17cd080a4491b1b49cb6f5968
build:
number: 0
rpaths:
Expand Down Expand Up @@ -80,4 +80,9 @@ about:
home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
license: Artistic-2.0
summary: 'This package provides a GUI interface for DAPAR.'
extra:
parent_recipe:
name: bioconductor-prostar
path: recipes/bioconductor-prostar
version: 1.14.7

2 changes: 1 addition & 1 deletion recipes/r-tigger/meta.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -11,7 +11,7 @@ source:
sha256: 2dc221be0a01a608bb9b0cd5e0cd44e257e14f7add46cd97fab729620e55c8ab

build:
number: 0
number: 1
noarch: generic
rpaths:
- lib/R/lib/
Expand Down

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