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#!/bin/bash | ||
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if [[ $target_platform =~ linux.* ]] || [[ $target_platform == osx-64 ]]; then | ||
export DISABLE_AUTOBREW=1 | ||
mv DESCRIPTION DESCRIPTION.old | ||
grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION | ||
$R CMD INSTALL --build . | ||
else | ||
mkdir -p $PREFIX/lib/R/library/momr | ||
mv * $PREFIX/lib/R/library/momr | ||
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if [[ $target_platform == osx-64 ]]; then | ||
pushd $PREFIX | ||
for libdir in lib/R/lib lib/R/modules lib/R/library lib/R/bin/exec sysroot/usr/lib; do | ||
pushd $libdir || exit 1 | ||
for SHARED_LIB in $(find . -type f -iname "*.dylib" -or -iname "*.so" -or -iname "R"); do | ||
echo "fixing SHARED_LIB $SHARED_LIB" | ||
install_name_tool -change /Library/Frameworks/R.framework/Versions/3.5.0-MRO/Resources/lib/libR.dylib "$PREFIX"/lib/R/lib/libR.dylib $SHARED_LIB || true | ||
install_name_tool -change /Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libR.dylib "$PREFIX"/lib/R/lib/libR.dylib $SHARED_LIB || true | ||
install_name_tool -change /usr/local/clang4/lib/libomp.dylib "$PREFIX"/lib/libomp.dylib $SHARED_LIB || true | ||
install_name_tool -change /usr/local/gfortran/lib/libgfortran.3.dylib "$PREFIX"/lib/libgfortran.3.dylib $SHARED_LIB || true | ||
install_name_tool -change /Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libquadmath.0.dylib "$PREFIX"/lib/libquadmath.0.dylib $SHARED_LIB || true | ||
install_name_tool -change /usr/local/gfortran/lib/libquadmath.0.dylib "$PREFIX"/lib/libquadmath.0.dylib $SHARED_LIB || true | ||
install_name_tool -change /Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgfortran.3.dylib "$PREFIX"/lib/libgfortran.3.dylib $SHARED_LIB || true | ||
install_name_tool -change /usr/lib/libgcc_s.1.dylib "$PREFIX"/lib/libgcc_s.1.dylib $SHARED_LIB || true | ||
install_name_tool -change /usr/lib/libiconv.2.dylib "$PREFIX"/sysroot/usr/lib/libiconv.2.dylib $SHARED_LIB || true | ||
install_name_tool -change /usr/lib/libncurses.5.4.dylib "$PREFIX"/sysroot/usr/lib/libncurses.5.4.dylib $SHARED_LIB || true | ||
install_name_tool -change /usr/lib/libicucore.A.dylib "$PREFIX"/sysroot/usr/lib/libicucore.A.dylib $SHARED_LIB || true | ||
install_name_tool -change /usr/lib/libexpat.1.dylib "$PREFIX"/lib/libexpat.1.dylib $SHARED_LIB || true | ||
install_name_tool -change /usr/lib/libcurl.4.dylib "$PREFIX"/lib/libcurl.4.dylib $SHARED_LIB || true | ||
install_name_tool -change /usr/lib/libc++.1.dylib "$PREFIX"/lib/libc++.1.dylib $SHARED_LIB || true | ||
install_name_tool -change /Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libc++.1.dylib "$PREFIX"/lib/libc++.1.dylib $SHARED_LIB || true | ||
done | ||
popd | ||
done | ||
popd | ||
fi | ||
fi |
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{% set version = '1.1' %} | ||
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package: | ||
name: r-momr | ||
version: {{ version|replace("-", "_") }} | ||
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source: | ||
url: | ||
- {{ cran_mirror }}/src/contrib/momr_{{ version }}.tar.gz | ||
- {{ cran_mirror }}/src/contrib/Archive/momr/momr_{{ version }}.tar.gz | ||
sha256: b9249b5b7fd6a201ba015327db1ed54abc958bd03e8a4713c249d486b8fa3b24 | ||
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build: | ||
number: 0 | ||
rpaths: | ||
- lib/R/lib/ | ||
- lib/ | ||
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requirements: | ||
host: | ||
- r-base | ||
- r-hmisc | ||
- r-gplots | ||
- r-nortest | ||
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run: | ||
- r-base | ||
- r-hmisc | ||
- r-gplots | ||
- r-nortest | ||
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test: | ||
commands: | ||
- $R -e "library('momr')" | ||
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about: | ||
home: https://CRAN.R-project.org/package=momr | ||
license: Artistic-2.0 (Restricts use) | ||
summary: '''MetaOMineR'' suite is a set of R packages that offers many functions and modules | ||
needed for the analyses of quantitative metagenomics data. ''momr'' is the core | ||
package and contains routines for biomarker identification and exploration. Developed | ||
since the beginning of field, ''momr'' has evolved and is structured around the | ||
different modules such as preprocessing, analysis, vizualisation, etc. See package | ||
help for more information.' | ||
license_family: OTHER | ||
license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/Artistic-2.0' |