fix: more adjustments and fixes (#92)

bihealth · Feb 5, 2024 · 1f2f8b2 · 1f2f8b2
1 parent 39150cc
commit 1f2f8b2
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Showing 5 changed files with 3,641 additions and 3,518 deletions.
diff --git a/src/api/annonars/types.ts b/src/api/annonars/types.ts
@@ -1,7 +1,7 @@
 import type { JsonValue } from '@protobuf-ts/runtime'
 
 import { Record as ClinvarSeqvarRecord } from '../../pbs/annonars/clinvar/minimal'
-import { Record as ClinvarStrucvarRecord } from '../../pbs/annonars/clinvar/sv'
+import { ResponseRecord as ClinvarStrucvarResponseRecord } from '../../pbs/annonars/clinvar/sv'
 import { Record as UcscConservationRecord } from '../../pbs/annonars/cons/base'
 import { Record as DbsnpRecord } from '../../pbs/annonars/dbsnp/base'
 import { Record as GeneInfoRecord } from '../../pbs/annonars/genes/base'
@@ -15,14 +15,14 @@ import { Record as HelixmtdbRecord } from '../../pbs/annonars/helixmtdb/base'
  * Interface for Clinvar Strucvars query response as returned by
  */
 export interface ClinvarSvQueryResponse$Api {
-  records: ClinvarStrucvarRecord[]
+  records: JsonValue[]
 }
 
 /**
  * Interface for Clinvar Strucvars query result.
  */
 export interface ClinvarSvQueryResponse {
-  records: ClinvarStrucvarRecord[]
+  records: ClinvarStrucvarResponseRecord[]
 }
 
 /**
@@ -31,7 +31,7 @@ export interface ClinvarSvQueryResponse {
 class ClinvarSvQueryResponse$Type {
   fromJson(apiResponse: ClinvarSvQueryResponse$Api): ClinvarSvQueryResponse {
     return {
-      records: apiResponse.records
+      records: apiResponse.records.map((value) => ClinvarStrucvarResponseRecord.fromJson(value))
     }
   }
 }

diff --git a/src/components/StrucvarClinvarCard/StrucvarClinvarCard.spec.ts b/src/components/StrucvarClinvarCard/StrucvarClinvarCard.spec.ts
@@ -19,7 +19,7 @@ const strucvarInfo: Strucvar = {
 }
 const clinvarSvRecords = JSON.parse(
   fs.readFileSync(path.resolve(__dirname, './fixture.clinvarSvRecords.BRCA1.json'), 'utf8')
-).map((record: JsonValue) => ClinvarSvRecord.fromJson(record))
+).records.map((record: JsonValue) => ClinvarSvRecord.fromJson(record))
 
 describe.concurrent('StrucvarClinvarCard.vue', async () => {
   it('renders the info', async () => {