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Refactor empirical log parsing logic #24

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Merged
ypriverol merged 4 commits into from
Apr 1, 2026
Merged

Refactor empirical log parsing logic #24

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fb9eb34
fix
yueqixuan Mar 31, 2026
0110a3d
update
yueqixuan Apr 1, 2026
a7db13b
update
yueqixuan Apr 1, 2026
bfde7a9
fix
yueqixuan Apr 1, 2026
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2 changes: 1 addition & 1 deletion modules/local/diann/assemble_empirical_library/main.nf
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Original file line number Diff line number Diff line change
Expand Up @@ -19,7 +19,7 @@ process ASSEMBLE_EMPIRICAL_LIBRARY {
path "empirical_library.*", emit: empirical_library
path "assemble_empirical_library.log", emit: log
path "versions.yml", emit: versions
env CALIBRATED_PARAMS_VAL, emit: calibrated_params_val
env "CALIBRATED_PARAMS_VAL", emit: calibrated_params_val

when:
task.ext.when == null || task.ext.when
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2 changes: 1 addition & 1 deletion modules/local/parse_empirical_log/main.nf
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Expand Up @@ -5,7 +5,7 @@ process PARSE_EMPIRICAL_LOG {
path log_file

output:
env PARSED_VALS, emit: parsed_vals
env "PARSED_VALS", emit: parsed_vals

script:
"""
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