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Upgrade 2.5.1 template #220

Merged
merged 51 commits into from
Sep 13, 2022
Merged

Upgrade 2.5.1 template #220

merged 51 commits into from
Sep 13, 2022

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ypriverol
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PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
    • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
    • If necessary, also make a PR on the nf-core/quantms branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

nf-core-bot and others added 30 commits March 24, 2022 11:44
[Testing] Add test profile as alias to test_lfq
Important! Template update for nf-core/tools v2.4
Add mimetype to input parameter in schema
Major changes in the quantms package
[Fix] links due to server change
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github-actions bot commented Sep 13, 2022

nf-core lint overall result: Passed ✅

Posted for pipeline commit c23a861

+| ✅ 151 tests passed       |+
#| ❔   3 tests were ignored |#

❔ Tests ignored:

✅ Tests passed:

Run details

  • nf-core/tools version 2.5.1
  • Run at 2022-09-13 09:39:31


if (conda_check_failed) {
if (channels_missing | channel_priority_violation) {
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BitwiseOperatorInConditional: Use of a bitwise or (|) operator in a conditional


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[ 🙁 Not relevant ] - [ 😕 Won't fix ] - [ 😑 Not critical, will fix ] - [ 🙂 Critical, will fix ] - [ 😊 Critical, fixing now ]

@ypriverol ypriverol merged commit 6200756 into bigbio:dev Sep 13, 2022
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6 participants