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Subworkflow for search #9

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ypriverol opened this issue Nov 8, 2021 · 2 comments
Closed

Subworkflow for search #9

ypriverol opened this issue Nov 8, 2021 · 2 comments
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@qinchunyuan
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enhancement New feature or request new-subworkflow
Milestone
first release v1.0

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@ypriverol
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DatabaseSearchEngines

Including the following processes: process search_engine_msgf, process search_engine_comet and index_peptides (starting from 2.7.1, indexing is done internally per default anyway)
@ypriverol ypriverol added enhancement New feature or request new-subworkflow labels Nov 8, 2021
@jpfeuffer
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Channels:
takes: mzml_id, mzmls, per_file_settings
outputs: mzml_id, idxmls

Global params:
needs: params.searchengines, and any setting not defined by the sdrf
could set: nr_searchengines

@ypriverol ypriverol added this to the first release v1.0 milestone Nov 14, 2021
@ypriverol
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done

daichengxin added a commit that referenced this issue Mar 15, 2022
@daichengxin
Merge pull request #9 from bigbio/dev
06b5874 
Merge pull request #112 from daichengxin/dev
ypriverol pushed a commit that referenced this issue May 20, 2022
@daichengxin
Merge pull request #9 from bigbio/dev
7e13421 
u
ypriverol pushed a commit that referenced this issue Nov 6, 2023
@daichengxin
Merge pull request #9 from bigbio/readthedocs
c4bfab6 
Readthedocs
ypriverol pushed a commit that referenced this issue Feb 24, 2024
@jspaezp
Bugfix/aws staging (#9)
9f4cd5b 
* bugfix mzml stats on dia data
* propagated file subsetting to empirical library generation
* fixes diann conversion without ambiguous groups
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@qinchunyuan qinchunyuan

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enhancement New feature or request new-subworkflow
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first release v1.0
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@ypriverol @jpfeuffer @qinchunyuan