ENH: Speed up indexing by bulk committing to database #1013
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Pre-release checks | |
| # This file tests against pre-release wheels for dependencies | |
| on: | |
| push: | |
| branches: | |
| - master | |
| - maint/* | |
| pull_request: | |
| branches: | |
| - master | |
| - maint/* | |
| schedule: | |
| # 8am EST / 9am EDT Mondays | |
| - cron: '0 13 * * 1' | |
| defaults: | |
| run: | |
| shell: bash | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| pre-release: | |
| # Check pre-releases of dependencies on stable Python | |
| runs-on: ${{ matrix.os }} | |
| continue-on-error: true | |
| strategy: | |
| matrix: | |
| os: ['ubuntu-latest', 'macos-latest'] | |
| python-version: [3.9, "3.10", "3.11"] | |
| install: ['pip'] | |
| check: ['ci_tests'] | |
| pip-flags: ['PRE_PIP_FLAGS'] | |
| requirements: [''] | |
| fail-fast: false | |
| env: | |
| INSTALL_TYPE: ${{ matrix.install }} | |
| CHECK_TYPE: ${{ matrix.check }} | |
| EXTRA_PIP_FLAGS: ${{ matrix.pip-flags }} | |
| OS_TYPE: ${{ matrix.os }} | |
| REQUIREMENTS: ${{ matrix.requirements }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| submodules: recursive | |
| fetch-depth: 0 | |
| - name: Install dependencies | |
| run: tools/ci/install_dependencies.sh | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Display Python version | |
| run: python -c "import sys; print(sys.version)" | |
| - name: Create virtual environment | |
| run: tools/ci/create_venv.sh | |
| - name: Build archive | |
| run: | | |
| source tools/ci/build_archive.sh | |
| echo "ARCHIVE=$ARCHIVE" >> $GITHUB_ENV | |
| - name: Install pybids | |
| run: tools/ci/install.sh | |
| - name: Install extras | |
| run: tools/ci/install_extras.sh | |
| - name: Run tests | |
| run: | | |
| source tools/ci/activate.sh | |
| make $CHECK_TYPE | |
| if: ${{ matrix.check != 'skiptests' }} | |
| - uses: codecov/codecov-action@v3 | |
| with: | |
| file: cov.xml | |
| if: ${{ always() }} |