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Northeastern University
- Boston, MA, USA
- https://gyorilab.github.io
- @benjamingyori
Highlights
- Pro
Pinned Loading
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indra
indra PublicForked from sorgerlab/indra
Integrated Network and Dynamical Reasoning Assembler
Python 1
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emmaa
emmaa PublicForked from gyorilab/emmaa
Ecosystem of Machine-maintained Models with Automated Analysis
Python
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famplex
famplex PublicForked from sorgerlab/famplex
Namespace encoding hierarchical relationships between proteins, protein families, and protein complexes.
Python
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gyorilab/gilda
gyorilab/gilda PublicGrounding of biomedical named entities with contextual disambiguation
1,161 contributions in the last year
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Activity overview
Contribution activity
April 2025
Created a pull request in biopragmatics/bioregistry that received 1 comment
Curate logo URL for UniProt
Just a follow up to #863 with one more useful one.
Opened 4 other pull requests in 1 repository
biopragmatics/bioregistry
4
merged
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Curate some missing logos
This contribution was made on Apr 11
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New prefix: antifam
This contribution was made on Apr 8
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Fix integbio provider URL
This contribution was made on Apr 3
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Update ISBN resolver and add examples
This contribution was made on Apr 2
Reviewed 11 pull requests in 3 repositories
gyorilab/indra_cogex
6 pull requests
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Add network graph endpoints and vis.js integration for displaying network visualizations for GO and Subnetwork Explorers
This contribution was made on Apr 24
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Integrating indra_db pipeline and cogex pipeline
This contribution was made on Apr 14
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Add Interactive Network Visualization to Publication Explorer
This contribution was made on Apr 7
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Clarify endpoints
This contribution was made on Apr 7
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Fix docstrings for apidocs
This contribution was made on Apr 7
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Functionalities to check agent existence
This contribution was made on Apr 2
biopragmatics/bioregistry
4 pull requests
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Curate Mappings With <0.5 Similarity Score
This contribution was made on Apr 15
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Update agricola pattern and resolution
This contribution was made on Apr 8
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Add date issue and (optional) tracker item to mapping SSSOM
This contribution was made on Apr 4
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Update ISBN resolver and add examples
This contribution was made on Apr 3
gyorilab/indra_db
1 pull request
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Save intermediate data for cogex pipeline
This contribution was made on Apr 14
Created an issue in biopragmatics/bioregistry that received 1 comment
Clarify jax
vs jaxmice
While reviewing metaregistry mappings with @nagutm, we noticed that there are two separate records for jax
and jaxmice
but they ultimately both rep…
Opened 4 other issues in 1 repository
biopragmatics/bioregistry
3
open
1
closed
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Ambiguous metaregistry mappings for PDB
This contribution was made on Apr 11
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Register biomarkerkb
This contribution was made on Apr 8
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Register AntiFam
This contribution was made on Apr 8
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Provider URI for n2t doesn't work currently
This contribution was made on Apr 3