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@berenslab

Berens Lab @ University of Tübingen

Department of Data Science at the Hertie Institute for AI in Brain Health, University of Tübingen

Popular repositories Loading

  1. rna-seq-tsne rna-seq-tsne Public

    The art of using t-SNE for single-cell transcriptomics

    Jupyter Notebook 122 34

  2. t-simcne t-simcne Public

    Unsupervised visualization of image datasets using contrastive learning

    Python 116 12

  3. pubmed-landscape pubmed-landscape Public

    The landscape of biomedical research

    Jupyter Notebook 114 11

  4. neural_data_science neural_data_science Public

    Contains programming labs and lecture notes for the lecture "Neural Data Science"

    Jupyter Notebook 102 25

  5. uneye uneye Public

    Deep neural network for eye movement detection

    Jupyter Notebook 76 31

  6. contrastive-ne contrastive-ne Public

    Contrastive neighbor embeddings

    Jupyter Notebook 52 6

Repositories

Showing 10 of 72 repositories
  • hh_sbi Public
    Jupyter Notebook 1 GPL-3.0 0 0 0 Updated Mar 5, 2025
  • disentangling-retinal-images Public

    This repository contains the code for the paper "Disentangling representations of retinal images with generative models".

    Python 0 0 0 0 Updated Mar 5, 2025
  • AIMS2025-NeuroSimInf Public

    Course repository for Simulation and Inference for Neuroscience

    Jupyter Notebook 0 2 1 0 Updated Mar 4, 2025
  • retinal-rl Public

    Testing theories about retinal coding in reinforcement learning environments

    Python 0 AGPL-3.0 1 23 3 Updated Feb 26, 2025
  • sBNN Public

    A sparse bottleneck neural network to predict electrophysiological properties of neurons from their gene expression.

    Jupyter Notebook 4 GPL-3.0 0 0 0 Updated Feb 25, 2025
  • llm-excess-vocab Public

    Delving into LLM-assisted writing in biomedical publications through excess vocabulary

    Jupyter Notebook 34 MIT 5 1 0 Updated Feb 19, 2025
  • elephant-in-the-room Public

    Companion repository to our Lause, Berens & Kobak (2024) paper "The art of seeing the elephant in the room: 2D embeddings of single-cell data do make sense" (PLOS Computational Biology)

    Jupyter Notebook 6 GPL-3.0 0 0 0 Updated Feb 13, 2025
  • fundus_image_toolbox Public

    A Python package for fundus image processing.

    Jupyter Notebook 7 MIT 1 0 0 Updated Feb 11, 2025
  • contrastive-ne Public

    Contrastive neighbor embeddings

    Jupyter Notebook 52 MIT 6 1 0 Updated Feb 7, 2025
  • iclr-dataset Public

    ICLR dataset

    Jupyter Notebook 23 5 1 0 Updated Feb 7, 2025
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