feat: Add dummy groups to test_full table

beiko-lab · Jul 25, 2024 · 4419e4a · 4419e4a
1 parent 0e23b10
commit 4419e4a
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Showing 2 changed files with 10 additions and 9 deletions.
diff --git a/conf/test_full.config b/conf/test_full.config
@@ -20,6 +20,7 @@ params {
     use_prokka = true
     use_ppanggolin = true
     skip_poppunk = true
+    upset_plot_columns = "group_one,group_two"
 }
 
 process {

diff --git a/test/test_full_samplesheet.csv b/test/test_full_samplesheet.csv
@@ -1,9 +1,9 @@
-sample,fna_file_path
-ED073,https://raw.githubusercontent.com/jvfe/arete-test-data/main/test_full/ED073.fa
-ED142,https://raw.githubusercontent.com/jvfe/arete-test-data/main/test_full/ED142.fa
-ED195,https://raw.githubusercontent.com/jvfe/arete-test-data/main/test_full/ED195.fa
-ED287,https://raw.githubusercontent.com/jvfe/arete-test-data/main/test_full/ED287.fa
-ED413,https://raw.githubusercontent.com/jvfe/arete-test-data/main/test_full/ED413.fa
-ED423,https://raw.githubusercontent.com/jvfe/arete-test-data/main/test_full/ED423.fa
-ED603,https://raw.githubusercontent.com/jvfe/arete-test-data/main/test_full/ED603.fa
-ED644,https://raw.githubusercontent.com/jvfe/arete-test-data/main/test_full/ED644.fa
+sample,fna_file_path,group_one,group_two
+ED073,https://raw.githubusercontent.com/jvfe/arete-test-data/main/test_full/ED073.fa,test2,group1
+ED142,https://raw.githubusercontent.com/jvfe/arete-test-data/main/test_full/ED142.fa,test2,group1
+ED195,https://raw.githubusercontent.com/jvfe/arete-test-data/main/test_full/ED195.fa,test2,group1
+ED287,https://raw.githubusercontent.com/jvfe/arete-test-data/main/test_full/ED287.fa,test1,group1
+ED413,https://raw.githubusercontent.com/jvfe/arete-test-data/main/test_full/ED413.fa,test3,group2
+ED423,https://raw.githubusercontent.com/jvfe/arete-test-data/main/test_full/ED423.fa,test3,group2
+ED603,https://raw.githubusercontent.com/jvfe/arete-test-data/main/test_full/ED603.fa,test1,group2
+ED644,https://raw.githubusercontent.com/jvfe/arete-test-data/main/test_full/ED644.fa,test1,group2