fix: Change regex for core tree

beiko-lab · Aug 14, 2023 · 3a979c0 · 3a979c0
1 parent 9ff573a
commit 3a979c0
Showing 1 changed file with 3 additions and 1 deletion.
diff --git a/subworkflows/local/phylo.nf b/subworkflows/local/phylo.nf
@@ -102,7 +102,9 @@ workflow PHYLOGENOMICS{
             ch_software_versions = ch_software_versions.mix(FASTTREE.out.versions.ifEmpty(null))
             core_tree = FASTTREE.out.phylogeny
                 .flatten()
-                .filter( ~/^core.*/ )
+                .map { it -> it.toString() }
+                .filter( ~/.*core.*/ )
+                .map { file(it) }
         }
 
         if (!use_fasttree && !params.use_ppanggolin) {