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Obsobj update to main/v2.0 #311
Commits on Jan 3, 2024
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Start work on Observation class, trying to maintain backwards compati…
…bility with obs dicts.
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Working basic predictions with multiple spectra.
Also add logic for caching emission line variances from MLE.
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Move noise models to observation objects.
Offloads likelihood computations to NoiseModel objects that are attached to individual Observation instances. Also updates lnprobfn to handle lists of observations, and adds some docstrings and rough tests. fitting ubdates for observation lists; dosctring modernization.
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Move observation submodule to new data module;
Numerous tweaks to observation generation from old style dicts; Changes to test_eline for new predict() api.
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Observation object methods to convert to structures, fits, h5, etc. Better docstrings. New Observation.Lines subclass. Fix import error in sedmodel.
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Starting on io simplification.
Includes option to try to pickle model params.
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explicitly set output wavelength to sps when no input wavelength; ass…
…ume FilterSet; require sedpy >= 0.3
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Simplification of prospect.sources
Moves the SSPBasis and FastStepBasis to galaxy_basis module. Removes the ssp_basis, dust_basis, and boneyard modules. Removes the get_spectrum method from SSPBasis and subclasses; this is handled by SpecModel Remove various multicomponent hacks.
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replace LineSpec with a method of SpecModel; rename get_el() to the m…
…ore descriptive fit_mle_elines()
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fixes for run_dynesty; better observation data checking; some work wi…
…th noise modeling.
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fix bug in covariance construction; add option to median smooth befor…
…e polynomial fitting; comment out broken bestfit model saving.
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Rename prospect.data -> prospect.observation. Also slight change to i…
…nstrumental smoothing.
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fix tests; put weight vector names in the kernels; add a NoiseModel1D…
… class for uncorrelated kernels (like jitter).
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Add instrumental resolution to emission linewidths;
Treat case of dummy observation that is not any of the recognized kinds; Bump python version requirement.
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handle spectrum padding when no resoltion or wavelength; actually tes…
…t in lnlike_testing
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Commits on Jan 4, 2024
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Commits on Jan 8, 2024
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