Update github actions v2

.github/workflows/codecov.yml

@@ -1,16 +1,17 @@
-name: test-coverage
+name: test_coverage
 
 on:
   push:
     branches:
       - main
+
 jobs:
   test:
     runs-on: ubuntu-latest
 
     env:
       R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
-      GITHUB_PAT: ${{secrets.GH_GCAMREPORT_TOKEN}}
+      GITHUB_PAT: ${{secrets.GH_PAT_RFASST}}
 
     steps:
       - uses: actions/checkout@v2
@@ -36,14 +37,20 @@ jobs:
 
       - name: Install dependencies
         run: |
-          install.packages(c("remotes","rcmdcheck"), repos = "https://cloud.r-project.org")
-          remotes::install_deps(dependencies = TRUE)
+          install.packages(c("remotes","rcmdcheck","covr"), repos = "https://cloud.r-project.org")
           remotes::install_github("JGCRI/rpackageutils")
-          remotes::install_github("bc3LC/rfasst@dev_k")
+          remotes::install_github("bc3LC/rfasst")
+          remotes::install_deps(dependencies = TRUE)
+        shell: Rscript {0}
+
+      - name: Test coverage
+        run: |
+          cov <- covr::package_coverage()
+          covr:::report(cov, file = "coverage.xml")
         shell: Rscript {0}
 
-      - name: Upload coverage reports to Codecov
-        uses: codecov/[email protected]
+      - uses: codecov/codecov-action@v3
         with:
-          token: ${{ secrets.CODECOV_TOKEN }}
-          slug: bc3LC/rfasstui
+          token: ${{secrets.CODECOV_TOKEN}}
+          files: ./coverage.xml
+          verbose: true