Skip to content
@barricklab

Barrick Lab

Barrick Lab at the University of Texas at Austin

Pinned Loading

  1. breseq breseq Public

    breseq is a computational pipeline for finding mutations relative to a reference sequence in short-read DNA resequencing data. It is intended for haploid microbial genomes (<20 Mb). breseq is a com…

    C++ 157 21

  2. LTEE-Ecoli LTEE-Ecoli Public

    Genomics resources for the Long-Term Evolution Experiment with E. coli

    GAP 16 4

  3. ostir ostir Public

    Software for predicting translation initiation rates in bacteria

    Python 21 9

  4. pLannotate pLannotate Public

    Forked from mmcguffi/pLannotate

    Webserver and command line tool for annotating engineered plasmids

    Python 13 4

  5. brefito brefito Public

    Snakemake pipelines for analyzing resequenced bacterial genomes

    Python 2 1

Repositories

Showing 10 of 48 repositories
  • brefito Public

    Snakemake pipelines for analyzing resequenced bacterial genomes

    barricklab/brefito’s past year of commit activity
    Python 2 MIT 1 0 0 Updated Feb 17, 2025
  • genomediff-python Public Forked from rohanmaddamsetti/genomediff-python

    GenomeDiff (*.gd) file parser for Python

    barricklab/genomediff-python’s past year of commit activity
    Python 0 MIT 7 0 1 Updated Feb 11, 2025
  • seabreeze Public Forked from ira-zibbu/seabreeze-ltee-analysis

    seabreeze: A Pipeline for Analyzing Structural Variation Between Bacterial Genome Assemblies

    barricklab/seabreeze’s past year of commit activity
    Python 0 MIT 1 0 0 Updated Feb 3, 2025
  • breseq Public

    breseq is a computational pipeline for finding mutations relative to a reference sequence in short-read DNA resequencing data. It is intended for haploid microbial genomes (<20 Mb). breseq is a command line tool implemented in C++ and R.

    barricklab/breseq’s past year of commit activity
    C++ 157 GPL-2.0 21 37 0 Updated Feb 1, 2025
  • cryptkeeper Public

    Tool for visualizing unintentional bacterial gene expression from a DNA sequence

    barricklab/cryptkeeper’s past year of commit activity
    Python 2 GPL-3.0 0 0 0 Updated Jan 31, 2025
  • RhoTermPredict Public Forked from MarcoDiSalvo90/RhoTermPredict
    barricklab/RhoTermPredict’s past year of commit activity
    Python 0 AGPL-3.0 11 0 0 Updated Jan 31, 2025
  • LTEE-Ecoli Public

    Genomics resources for the Long-Term Evolution Experiment with E. coli

    barricklab/LTEE-Ecoli’s past year of commit activity
    GAP 16 CC0-1.0 4 1 0 Updated Jan 20, 2025
  • breseq-ext-cnv Public

    breseq copy number variation extension

    barricklab/breseq-ext-cnv’s past year of commit activity
    Python 0 GPL-2.0 0 0 0 Updated Jan 15, 2025
  • LTEE-leaderboard Public

    Shiny tool for viewing the transfer history of the E. coli Long-Term Evolution Experiment

    barricklab/LTEE-leaderboard’s past year of commit activity
    R 0 0 0 0 Updated Jan 4, 2025
  • bioconda-recipes Public Forked from bioconda/bioconda-recipes

    Conda recipes for the bioconda channel.

    barricklab/bioconda-recipes’s past year of commit activity
    Shell 0 MIT 3,384 0 0 Updated Dec 29, 2024
View all repositories

People

This organization has no public members. You must be a member to see who’s a part of this organization.

Top languages

Loading…

Most used topics

Loading…