FIX(qmri): add channel dimension in meetup (needed for non compiled b… #597
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| name: nitorch-test | |
| on: | |
| workflow_dispatch: | |
| inputs: | |
| fail-fast: | |
| description: 'Fail fast mode' | |
| required: false | |
| default: 'true' | |
| push: | |
| paths: | |
| # all library files | |
| - "nitorch/**" | |
| branches: [ master ] | |
| pull_request: | |
| # always run tests on pull request | |
| branches: [ master ] | |
| jobs: | |
| test: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: ${{ github.event.inputs.fail-fast == 'true' }} | |
| matrix: | |
| os: [ ubuntu-18.04 ] # we only run tests on ubuntu/cpu | |
| python-version: [ '3.6' ] # smallest version supported | |
| pytorch-version: [ '1.4', '1.10' ] # smallest and biggest versions | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Python ${{ matrix.python-version }} on ${{ matrix.os }} | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install pip | |
| run: | | |
| python -m pip install --upgrade pip | |
| if [ -f requirements.txt ]; then pip install -r requirements.txt; fi | |
| pip install nibabel | |
| pip install tifffile | |
| - name: Install PyTorch ${{ matrix.pytorch-version }} | |
| env: | |
| cuda: cpu | |
| torch: ${{ matrix.pytorch-version }} | |
| shell: bash | |
| run: | | |
| os="$(cut -d'-' -f1 <<< ${{ matrix.os }})" | |
| echo "$os" | |
| if [ ! -f "./scripts/actions/install_pytorch_${os}.sh" ]; then | |
| echo "pytorch not available on ${os}" | |
| exit 1 | |
| fi | |
| source "./scripts/actions/install_pytorch_${os}.sh" | |
| # we must build in development mode for pytest to work in place | |
| - name: Build nitorch | |
| run: | | |
| # install scipy ourselves because setuptools does a poor job | |
| pip install scipy | |
| # wget needed for io test | |
| pip install wget | |
| NI_USE_CUDA=0 NI_COMPILED_BACKEND="C" python setup.py develop | |
| python -c "from nitorch._C import spatial" | |
| NI_SHOW_COMPILED_BACKEND=1 python -c "from nitorch._C import grid" | |
| # - name: Lint | |
| # run: | | |
| # pip install flake8 | |
| # flake8 . | |
| - name: Tests | |
| run: | | |
| pip install pytest | |
| pytest --ignore nitorch/tests/test_gradcheck_spatial.py |