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@axondeepseg

AxonDeepSeg

Segmentation software for microscopy data of nerve fibers based on deep learning.

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  1. axondeepseg axondeepseg Public

    Axon/Myelin segmentation using Deep Learning

    Python 115 32

Repositories

Showing 10 of 29 repositories
  • axon-detection Public

    Exploration of object detection applied to the AxonDeepSeg project

    axondeepseg/axon-detection’s past year of commit activity
    Jupyter Notebook 1 0 7 1 Updated Oct 30, 2024
  • seg_ci Public
    axondeepseg/seg_ci’s past year of commit activity
    Shell 0 0 0 0 Updated Oct 11, 2024
  • axondeepseg Public

    Axon/Myelin segmentation using Deep Learning

    axondeepseg/axondeepseg’s past year of commit activity
    Python 115 MIT 32 156 (11 issues need help) 6 Updated Sep 26, 2024
  • nn-axondeepseg Public

    1-class and 2-class segmentation of axon/myelin using nnunetv2

    axondeepseg/nn-axondeepseg’s past year of commit activity
    Python 1 0 5 0 Updated Sep 26, 2024
  • data_ci Public
    axondeepseg/data_ci’s past year of commit activity
    0 0 0 0 Updated Sep 20, 2024
  • data-testing Public

    Images and files used for software testing (unit and integration tests).

    axondeepseg/data-testing’s past year of commit activity
    0 MIT 0 0 0 Updated Aug 20, 2024
  • model-seg-human-brain-cars Public

    Axon and myelin segmentation model in histology images to quantify myelination in the human brain. Training data was acquired in the uncinate fasciculus using CARS microscopy.

    axondeepseg/model-seg-human-brain-cars’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jul 25, 2024
  • model_seg_unmyelinated_tem Public

    Model for unmyelinated axon segmentation in TEM images, based on nnUNet

    axondeepseg/model_seg_unmyelinated_tem’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Jul 8, 2024
  • AxonDeepSynth Public Forked from icon-lab/SynDiff

    Official PyTorch implementation of SynDiff described in the paper (https://arxiv.org/abs/2207.08208).

    axondeepseg/AxonDeepSynth’s past year of commit activity
    Python 0 39 0 1 Updated Jun 24, 2024
  • model_seg_generalist Public

    Axon and myelin segmentation model trained on all ADS datasets. Works across contrasts and resolutions.

    axondeepseg/model_seg_generalist’s past year of commit activity
    Python 1 0 2 0 Updated Apr 30, 2024
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