output file error fix #153
Workflow file for this run
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| name: Tests | |
| on: | |
| push: | |
| branches: | |
| - "main" | |
| pull_request: | |
| branches: | |
| - "*" | |
| schedule: | |
| - cron: "0 13 * * 1" | |
| jobs: | |
| build: | |
| name: Build (${{ matrix.python-version }} | ${{ matrix.os }}) | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: ["macos-latest", "ubuntu-latest", "windows-latest"] | |
| python-version: ["3.9", "3.10", "3.11"] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Cache conda | |
| uses: actions/cache@v4 | |
| env: | |
| # Increase this value to reset cache if ci/environment.yml has not changed | |
| CACHE_NUMBER: 0 | |
| with: | |
| path: ~/conda_pkgs_dir | |
| key: ${{ runner.os }}-conda-${{ env.CACHE_NUMBER }}-${{ hashFiles('ci/environment-py${{ matrix.python-version }}.yml') }} | |
| # - uses: conda-incubator/setup-miniconda@v3 | |
| # with: | |
| # # mamba-version: "*" # activate this to build with mamba. | |
| # python-version: ${{ matrix.python-version }} | |
| # miniforge-variant: Mambaforge | |
| # channels: conda-forge, defaults # These need to be specified to use mamba | |
| # channel-priority: true | |
| # environment-file: ci/environment-py${{ matrix.python-version }}.yml | |
| # activate-environment: test_env_particle-tracking-manager | |
| # use-only-tar-bz2: true # IMPORTANT: This needs to be set for caching to work properly! | |
| # - name: Set up conda environment | |
| # shell: bash -l {0} | |
| # run: | | |
| # python -m pip install -e . --no-deps --force-reinstall | |
| - name: Setup Micromamba Python ${{ matrix.python-version }} | |
| uses: mamba-org/setup-micromamba@v2 | |
| with: | |
| init-shell: bash | |
| create-args: >- | |
| python=${{ matrix.python-version }} --channel conda-forge | |
| environment-file: ci/environment-py${{ matrix.python-version }}.yml | |
| cache-environment: true | |
| post-cleanup: 'all' | |
| - name: Install package | |
| shell: bash -l {0} | |
| run: | | |
| python -m pip install -e . --no-deps --force-reinstall | |
| - name: Run Tests | |
| shell: bash -l {0} | |
| run: | | |
| pytest --cov=./ --cov-report=xml | |
| - name: Upload code coverage to Codecov | |
| uses: codecov/codecov-action@v4 | |
| with: | |
| file: ./coverage.xml | |
| flags: unittests | |
| env_vars: OS,PYTHON | |
| name: codecov-umbrella | |
| fail_ci_if_error: false |