Add support to select using graph-operators when using `LoadMode.CUSTOM` or `LoadMode.DBT_MANIFEST` by tatiana · Pull Request #728 · astronomer/astronomer-cosmos

tatiana · 2023-11-30T12:54:22Z

Add support for the following when using LoadMode.CUSTOM or LoadMode.DBT_MANIFEST:

Support selection of model by name
Support the selection of models by name & their children (with or without degrees)
Support the selection of models by name & their parents (with or without degrees)
Support intersections and unions involving graph selectors (with or without other supported selectors, eg. tags)

Examples of select/exclusion statements that now work regardless of the LoadMode being used:

model_a
+model_b
model_c+
+model_d+
2+model_e
model_f+3
model_f+,tag:nightly

Related dbt documentation:
https://docs.getdbt.com/reference/node-selection/graph-operators
https://docs.getdbt.com/reference/node-selection/set-operators

Limitations:

The at operator is not supported yet (@)
If users opt to use graph selector, it will increase the DAG parsing time and the task execution time when using LoadMode.CUSTOM or LoadMode.DBT_MANIFEST

This PR improves and extends the original implementation proposed by @tseruga in #429. Some of the changes that were introduced on top of the original PR:

Add support to descendants (before only precursors were supported)
Add support to different depths/degrees of precursors/descendants
Add support to the union between graph operators and graph/non-graph operators
Add support to the intersection between graph operators and graph/non-graph operators

Closes: #684

Co-authored-by: Tyler Seruga t.seruga@m1finance.com

Part of the spec described in: https://docs.getdbt.com/reference/node-selection/graph-operators#the-plus-operator Co-authored-by: Tatiana Al-Chueyr <tatiana.alchueyr@gmail.com>

…h selectors

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codecov · 2023-11-30T13:56:35Z

Codecov Report

Attention: 6 lines in your changes are missing coverage. Please review.

Comparison is base (e1f34ea) 92.99% compared to head (5fe2ccc) 93.05%.
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Files	Patch %	Lines
cosmos/dbt/selector.py	94.33%	6 Missing ⚠️

Additional details and impacted files

@@            Coverage Diff             @@
##             main     #728      +/-   ##
==========================================
+ Coverage   92.99%   93.05%   +0.05%     
==========================================
  Files          55       55              
  Lines        2313     2404      +91     
==========================================
+ Hits         2151     2237      +86     
- Misses        162      167       +5

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harels

minor doc string comment, lgtm

Co-authored-by: Harel Shein <harel.shein@astronomer.io>

@perttus

Features * Add ProfileMapping for Vertica by @perttus in #540 and #688 * Add support for Snowflake encrypted private key environment variable by @DanMawdsleyBA in #649 * Add support to select using (some) graph operators when using LoadMode.CUSTOM and LoadMode.DBT_MANIFEST by @tatiana in #728 * Add cosmos/propagate_logs Airflow config support for disabling log pr… by @agreenburg in #648 * Add operator_args full_refresh as a templated field by @joppevos in #623 * Expose environment variables and dbt variables in ProjectConfig by @jbandoro in #735 Enhancements * Make Pydantic an optional dependency by @pixie79 in #736 * Create a symbolic link to dbt_packages when dbt_deps is False when using LoadMode.DBT_LS by @DanMawdsleyBA in #730 * Support no profile_config for ExecutionMode.KUBERNETES and ExecutionMode.DOCKER by @MrBones757 and @tatiana in #681 and #731 * Add aws_session_token for Athena mapping by @benjamin-awd in #663 Others * Replace flake8 for Ruff by @joppevos in #743 * Reduce code complexity to 8 by @joppevos in #738 * Update conflict matrix between Airflow and dbt versions by @tatiana in #731 * Speed up integration tests by @jbandoro in #732

@perttus

Features * Add ProfileMapping for Vertica by @perttus in #540 and #688 * Add support for Snowflake encrypted private key environment variable by @DanMawdsleyBA in #649 * Add support to select using (some) graph operators when using LoadMode.CUSTOM and LoadMode.DBT_MANIFEST by @tatiana in #728 * Add cosmos/propagate_logs Airflow config support for disabling log pr… by @agreenburg in #648 * Add operator_args full_refresh as a templated field by @joppevos in #623 * Expose environment variables and dbt variables in ProjectConfig by @jbandoro in #735 Enhancements * Make Pydantic an optional dependency by @pixie79 in #736 * Create a symbolic link to dbt_packages when dbt_deps is False when using LoadMode.DBT_LS by @DanMawdsleyBA in #730 * Support no profile_config for ExecutionMode.KUBERNETES and ExecutionMode.DOCKER by @MrBones757 and @tatiana in #681 and #731 * Add aws_session_token for Athena mapping by @benjamin-awd in #663 Others * Replace flake8 for Ruff by @joppevos in #743 * Reduce code complexity to 8 by @joppevos in #738 * Update conflict matrix between Airflow and dbt versions by @tatiana in #731 * Speed up integration tests by @jbandoro in #732

@DanMawdsleyBA

**Features** * Add `ProfileMapping` for Snowflake encrypted private key path by @ivanstillfront in #608 * Add support for Snowflake encrypted private key environment variable by @DanMawdsleyBA in #649 * Add `DbtDocsGCSOperator` for uploading dbt docs to GCS by @jbandoro in #616 * Add support to select using (some) graph operators when using `LoadMode.CUSTOM` and `LoadMode.DBT_MANIFEST` by @tatiana in #728 * Add cosmos/propagate_logs Airflow config support for disabling log propagation by @agreenburg in #648 * Add operator_args ``full_refresh`` as a templated field by @joppevos in #623 * Expose environment variables and dbt variables in ``ProjectConfig`` by @jbandoro in #735 **Enhancements** * Make Pydantic an optional dependency by @pixie79 in #736 * Create a symbolic link to `dbt_packages` when `dbt_deps` is False when using `LoadMode.DBT_LS` by @DanMawdsleyBA in #730 * Support no `profile_config` for `ExecutionMode.KUBERNETES` and `ExecutionMode.DOCKER` by @MrBones757 and @tatiana in #681 and #731 * Add `aws_session_token` for Athena mapping by @benjamin-awd in #663 **Others** * Replace flake8 for Ruff by @joppevos in #743 * Reduce code complexity to 8 by @joppevos in #738 * Update conflict matrix between Airflow and dbt versions by @tatiana in #731 * Speed up integration tests by @jbandoro in #732

@woogakoki

**Features** * Add new parsing method ``LoadMode.DBT_LS_FILE`` by @woogakoki in #733 ([documentation](https://astronomer.github.io/astronomer-cosmos/configuration/parsing-methods.html#dbt-ls-file)). * Add support to select using (some) graph operators when using ``LoadMode.CUSTOM`` and ``LoadMode.DBT_MANIFEST`` by @tatiana in #728 ([documentation](https://astronomer.github.io/astronomer-cosmos/configuration/selecting-excluding.html#using-select-and-exclude)) * Add support for dbt ``selector`` arg for DAG parsing by @jbandoro in #755, ([documentation](https://astronomer.github.io/astronomer-cosmos/configuration/render-config.html#render-config)). * Add ``ProfileMapping`` for Vertica by @perttus in #540, #688 and #741, as ([documentation](https://astronomer.github.io/astronomer-cosmos/profiles/VerticaUserPassword.html)). * Add ``ProfileMapping`` for Snowflake encrypted private key path by @ivanstillfront in #608, as ([documentation]( https://astronomer.github.io/astronomer-cosmos/profiles/SnowflakeEncryptedPrivateKeyFilePem.html)). * Add support for Snowflake encrypted private key environment variable by @DanMawdsleyBA in #649 * Add ``DbtDocsGCSOperator`` for uploading dbt docs to GCS by @jbandoro in #616, ([documentation](https://astronomer.github.io/astronomer-cosmos/configuration/generating-docs.html#upload-to-gcs)). * Add cosmos/propagate_logs Airflow config support for disabling log propagation by @agreenburg in #648, ([documentation](https://astronomer.github.io/astronomer-cosmos/configuration/logging.html)). * Add operator_args ``full_refresh`` as a templated field by @joppevos in #623 * Expose environment variables and dbt variables in ``ProjectConfig`` by @jbandoro in #735 ([documentation](https://astronomer.github.io/astronomer-cosmos/configuration/project-config.html#project-config-example)). * Support disabling event tracking when using Cosmos profile mapping by @jbandoro in #768, ([documentation](https://astronomer.github.io/astronomer-cosmos/profiles/index.html#disabling-dbt-event-tracking)). **Enhancements** * Make Pydantic an optional dependency by @pixie79 in #736 * Create a symbolic link to ``dbt_packages`` when ``dbt_deps`` is False when using ``LoadMode.DBT_LS`` by @DanMawdsleyBA in #730 * Add ``aws_session_token`` for Athena mapping by @benjamin-awd in #663 * Retrieve temporary credentials from ``conn_id`` for Athena by @octiva in #758 * Extend ``DbtDocsLocalOperator`` with static flag by @joppevos in #759 **Bug fixes** * Remove Pydantic upper version restriction so Cosmos can be used with Airflow 2.8 by @jlaneve in #772 **Others** * Replace flake8 for Ruff by @joppevos in #743 * Reduce code complexity to 8 by @joppevos in #738 * Speed up integration tests by @jbandoro in #732 * Fix README quickstart link in by @RNHTTR in #776 * Add package location to work with hatchling 1.19.0 by @jbandoro in #761 * Fix type check error in ``DbtKubernetesBaseOperator.build_env_args`` by @jbandoro in #766 * Improve ``DBT_MANIFEST`` documentation by @dwreeves in #757 * Update conflict matrix between Airflow and dbt versions by @tatiana in #731 and #779 * pre-commit updates in #775, #770, #762

@woogakoki

**Features** * Add new parsing method ``LoadMode.DBT_LS_FILE`` by @woogakoki in astronomer#733 ([documentation](https://astronomer.github.io/astronomer-cosmos/configuration/parsing-methods.html#dbt-ls-file)). * Add support to select using (some) graph operators when using ``LoadMode.CUSTOM`` and ``LoadMode.DBT_MANIFEST`` by @tatiana in astronomer#728 ([documentation](https://astronomer.github.io/astronomer-cosmos/configuration/selecting-excluding.html#using-select-and-exclude)) * Add support for dbt ``selector`` arg for DAG parsing by @jbandoro in astronomer#755, ([documentation](https://astronomer.github.io/astronomer-cosmos/configuration/render-config.html#render-config)). * Add ``ProfileMapping`` for Vertica by @perttus in astronomer#540, astronomer#688 and astronomer#741, as ([documentation](https://astronomer.github.io/astronomer-cosmos/profiles/VerticaUserPassword.html)). * Add ``ProfileMapping`` for Snowflake encrypted private key path by @ivanstillfront in astronomer#608, as ([documentation]( https://astronomer.github.io/astronomer-cosmos/profiles/SnowflakeEncryptedPrivateKeyFilePem.html)). * Add support for Snowflake encrypted private key environment variable by @DanMawdsleyBA in astronomer#649 * Add ``DbtDocsGCSOperator`` for uploading dbt docs to GCS by @jbandoro in astronomer#616, ([documentation](https://astronomer.github.io/astronomer-cosmos/configuration/generating-docs.html#upload-to-gcs)). * Add cosmos/propagate_logs Airflow config support for disabling log propagation by @agreenburg in astronomer#648, ([documentation](https://astronomer.github.io/astronomer-cosmos/configuration/logging.html)). * Add operator_args ``full_refresh`` as a templated field by @joppevos in astronomer#623 * Expose environment variables and dbt variables in ``ProjectConfig`` by @jbandoro in astronomer#735 ([documentation](https://astronomer.github.io/astronomer-cosmos/configuration/project-config.html#project-config-example)). * Support disabling event tracking when using Cosmos profile mapping by @jbandoro in astronomer#768, ([documentation](https://astronomer.github.io/astronomer-cosmos/profiles/index.html#disabling-dbt-event-tracking)). **Enhancements** * Make Pydantic an optional dependency by @pixie79 in astronomer#736 * Create a symbolic link to ``dbt_packages`` when ``dbt_deps`` is False when using ``LoadMode.DBT_LS`` by @DanMawdsleyBA in astronomer#730 * Add ``aws_session_token`` for Athena mapping by @benjamin-awd in astronomer#663 * Retrieve temporary credentials from ``conn_id`` for Athena by @octiva in astronomer#758 * Extend ``DbtDocsLocalOperator`` with static flag by @joppevos in astronomer#759 **Bug fixes** * Remove Pydantic upper version restriction so Cosmos can be used with Airflow 2.8 by @jlaneve in astronomer#772 **Others** * Replace flake8 for Ruff by @joppevos in astronomer#743 * Reduce code complexity to 8 by @joppevos in astronomer#738 * Speed up integration tests by @jbandoro in astronomer#732 * Fix README quickstart link in by @RNHTTR in astronomer#776 * Add package location to work with hatchling 1.19.0 by @jbandoro in astronomer#761 * Fix type check error in ``DbtKubernetesBaseOperator.build_env_args`` by @jbandoro in astronomer#766 * Improve ``DBT_MANIFEST`` documentation by @dwreeves in astronomer#757 * Update conflict matrix between Airflow and dbt versions by @tatiana in astronomer#731 and astronomer#779 * pre-commit updates in astronomer#775, astronomer#770, astronomer#762

@tseruga

…OM` or `LoadMode.DBT_MANIFEST` (astronomer#728) Add support for the following when using `LoadMode.CUSTOM` or `LoadMode.DBT_MANIFEST`: * Support selection of model by name * Support the selection of models by name & their children (with or without degrees) * Support the selection of models by name & their parents (with or without degrees) * Support intersections and unions involving graph selectors (with or without other supported selectors, eg. tags) Examples of select/exclusion statements that now work regardless of the `LoadMode` being used: ``` model_a +model_b model_c+ +model_d+ 2+model_e model_f+3 model_f+,tag:nightly ``` Related dbt documentation: https://docs.getdbt.com/reference/node-selection/graph-operators https://docs.getdbt.com/reference/node-selection/set-operators Limitations: * The at operator is not supported yet (`@`) * If users opt to use graph selector, it will increase the DAG parsing time and the task execution time when using `LoadMode.CUSTOM` or `LoadMode.DBT_MANIFEST` This PR improves and extends the original implementation proposed by @tseruga in astronomer#429. Some of the changes that were introduced on top of the original PR: * Add support to descendants (before only precursors were supported) * Add support to different depths/degrees of precursors/descendants * Add support to the union between graph operators and graph/non-graph operators * Add support to the intersection between graph operators and graph/non-graph operators Closes: astronomer#684 Co-authored-by: Tyler Seruga <t.seruga@m1finance.com>

@DanMawdsleyBA

**Features** * Add `ProfileMapping` for Snowflake encrypted private key path by @ivanstillfront in astronomer#608 * Add support for Snowflake encrypted private key environment variable by @DanMawdsleyBA in astronomer#649 * Add `DbtDocsGCSOperator` for uploading dbt docs to GCS by @jbandoro in astronomer#616 * Add support to select using (some) graph operators when using `LoadMode.CUSTOM` and `LoadMode.DBT_MANIFEST` by @tatiana in astronomer#728 * Add cosmos/propagate_logs Airflow config support for disabling log propagation by @agreenburg in astronomer#648 * Add operator_args ``full_refresh`` as a templated field by @joppevos in astronomer#623 * Expose environment variables and dbt variables in ``ProjectConfig`` by @jbandoro in astronomer#735 **Enhancements** * Make Pydantic an optional dependency by @pixie79 in astronomer#736 * Create a symbolic link to `dbt_packages` when `dbt_deps` is False when using `LoadMode.DBT_LS` by @DanMawdsleyBA in astronomer#730 * Support no `profile_config` for `ExecutionMode.KUBERNETES` and `ExecutionMode.DOCKER` by @MrBones757 and @tatiana in astronomer#681 and astronomer#731 * Add `aws_session_token` for Athena mapping by @benjamin-awd in astronomer#663 **Others** * Replace flake8 for Ruff by @joppevos in astronomer#743 * Reduce code complexity to 8 by @joppevos in astronomer#738 * Update conflict matrix between Airflow and dbt versions by @tatiana in astronomer#731 * Speed up integration tests by @jbandoro in astronomer#732

@woogakoki

**Features** * Add new parsing method ``LoadMode.DBT_LS_FILE`` by @woogakoki in astronomer#733 ([documentation](https://astronomer.github.io/astronomer-cosmos/configuration/parsing-methods.html#dbt-ls-file)). * Add support to select using (some) graph operators when using ``LoadMode.CUSTOM`` and ``LoadMode.DBT_MANIFEST`` by @tatiana in astronomer#728 ([documentation](https://astronomer.github.io/astronomer-cosmos/configuration/selecting-excluding.html#using-select-and-exclude)) * Add support for dbt ``selector`` arg for DAG parsing by @jbandoro in astronomer#755, ([documentation](https://astronomer.github.io/astronomer-cosmos/configuration/render-config.html#render-config)). * Add ``ProfileMapping`` for Vertica by @perttus in astronomer#540, astronomer#688 and astronomer#741, as ([documentation](https://astronomer.github.io/astronomer-cosmos/profiles/VerticaUserPassword.html)). * Add ``ProfileMapping`` for Snowflake encrypted private key path by @ivanstillfront in astronomer#608, as ([documentation]( https://astronomer.github.io/astronomer-cosmos/profiles/SnowflakeEncryptedPrivateKeyFilePem.html)). * Add support for Snowflake encrypted private key environment variable by @DanMawdsleyBA in astronomer#649 * Add ``DbtDocsGCSOperator`` for uploading dbt docs to GCS by @jbandoro in astronomer#616, ([documentation](https://astronomer.github.io/astronomer-cosmos/configuration/generating-docs.html#upload-to-gcs)). * Add cosmos/propagate_logs Airflow config support for disabling log propagation by @agreenburg in astronomer#648, ([documentation](https://astronomer.github.io/astronomer-cosmos/configuration/logging.html)). * Add operator_args ``full_refresh`` as a templated field by @joppevos in astronomer#623 * Expose environment variables and dbt variables in ``ProjectConfig`` by @jbandoro in astronomer#735 ([documentation](https://astronomer.github.io/astronomer-cosmos/configuration/project-config.html#project-config-example)). * Support disabling event tracking when using Cosmos profile mapping by @jbandoro in astronomer#768, ([documentation](https://astronomer.github.io/astronomer-cosmos/profiles/index.html#disabling-dbt-event-tracking)). **Enhancements** * Make Pydantic an optional dependency by @pixie79 in astronomer#736 * Create a symbolic link to ``dbt_packages`` when ``dbt_deps`` is False when using ``LoadMode.DBT_LS`` by @DanMawdsleyBA in astronomer#730 * Add ``aws_session_token`` for Athena mapping by @benjamin-awd in astronomer#663 * Retrieve temporary credentials from ``conn_id`` for Athena by @octiva in astronomer#758 * Extend ``DbtDocsLocalOperator`` with static flag by @joppevos in astronomer#759 **Bug fixes** * Remove Pydantic upper version restriction so Cosmos can be used with Airflow 2.8 by @jlaneve in astronomer#772 **Others** * Replace flake8 for Ruff by @joppevos in astronomer#743 * Reduce code complexity to 8 by @joppevos in astronomer#738 * Speed up integration tests by @jbandoro in astronomer#732 * Fix README quickstart link in by @RNHTTR in astronomer#776 * Add package location to work with hatchling 1.19.0 by @jbandoro in astronomer#761 * Fix type check error in ``DbtKubernetesBaseOperator.build_env_args`` by @jbandoro in astronomer#766 * Improve ``DBT_MANIFEST`` documentation by @dwreeves in astronomer#757 * Update conflict matrix between Airflow and dbt versions by @tatiana in astronomer#731 and astronomer#779 * pre-commit updates in astronomer#775, astronomer#770, astronomer#762

tseruga and others added 10 commits November 28, 2023 16:36

Add dbt graph selector syntax for upstream dependencies (prefix +)

d7348ba

Part of the spec described in: https://docs.getdbt.com/reference/node-selection/graph-operators#the-plus-operator Co-authored-by: Tatiana Al-Chueyr <tatiana.alchueyr@gmail.com>

Refactor graph selector implementation

65fd4e1

Support depth in graph percursors

922fd69

Reduce code complexity

febdcb3

Support node descendants with depth

97d7247

Refactor

c8c6d22

Add support for graph selection union

12186cb

Support intersection between graph selectors

7a0b2b2

Support intersection of tag and graph selector

ce3bd7c

Support unions and intersections between graph-selectors and non-grap…

870935f

…h selectors

tatiana requested a review from a team as a code owner November 30, 2023 12:54

tatiana requested a review from a team November 30, 2023 12:54

dosubot Bot added the size:L This PR changes 100-499 lines, ignoring generated files. label Nov 30, 2023

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dosubot Bot added area:selector Related to selector, like DAG selector, DBT selector, etc dbt:run Primarily related to dbt run command or functionality parsing:custom Related to custom parsing, like custom DAG parsing, custom DBT parsing, etc labels Nov 30, 2023

Improve docstrings

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tatiana temporarily deployed to internal November 30, 2023 13:07 — with GitHub Actions Inactive

Update select/exclude docs

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tatiana added this to the 1.3.0 milestone Nov 30, 2023

tatiana mentioned this pull request Nov 30, 2023

Implement prefix + DBT selector graph operator for model selection #429

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tatiana added the parsing:dbt_manifest Issues, questions, or features related to dbt_manifest parsing label Nov 30, 2023

Merge branch 'main' into custom-selector-upstream-model

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jbandoro mentioned this pull request Dec 4, 2023

Can't use model name in selector #723

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Merge branch 'main' into custom-selector-upstream-model

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harels approved these changes Dec 5, 2023

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Update cosmos/dbt/selector.py

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Co-authored-by: Harel Shein <harel.shein@astronomer.io>

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tatiana merged commit 6deba22 into main Dec 5, 2023

tatiana deleted the custom-selector-upstream-model branch December 5, 2023 11:19

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Release 1.3.0a3 #753

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Release 1.3.0 #781

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Add support to select using graph-operators when using `LoadMode.CUSTOM` or `LoadMode.DBT_MANIFEST`#728

Add support to select using graph-operators when using `LoadMode.CUSTOM` or `LoadMode.DBT_MANIFEST`#728
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