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Hi, I report a possible bug in getfasta.
It seems -rna option does not work for plus strand record when setting -s option.
Here is a test bed file (test.bed):
chr3 89235292 89235302 test 0 +
chr3 89235292 89235302 test 0 -
Hi, I report a possible bug in
getfasta
.It seems
-rna
option does not work for plus strand record when setting-s
option.Here is a test bed file (
test.bed
):I ran the command:
the output was here:
The T in
>chr3:89235292-89235302(+)
are supposed to be U.Could you please take a look into it?
The version of bedtools I used was
v2.30.0
.Best,
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