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@bernt-matthias
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Tool was requested by one of my users - but needs a few improvements which I plan to contribute here. Ping @raphenya, @agmcarthur, @innovate-invent, @arpcard

Starting this PR as work in progress:

Will continue here:

  • datamanager should download versioned data
  • to should not make use of __tool_data_path__ but use the paths defined in the data table
  • more tests needed

Also:

  • add to planemo monitor (to get containers for the data manager - the tool should already have one, because it uses only a single bioconda requirement)

- new one is at https://github.com/arpcard/rgi_database_builder
  - but currently not yet deployed to the toolshed
  - will add it to this repo in a later commit
- current toolshed repo contains copy of the dysfunctional DM
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Stale pull request message

@github-actions github-actions bot added the stale label Sep 24, 2025
@natefoo
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natefoo commented Sep 26, 2025

We've had a request to install this tool on usegalaxy.org, the modernization here would go a long way to making this possible. Any chance this could get a review and merge?

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3 participants