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0.2.0
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@apetkau apetkau released this 01 Sep 03:10
· 100 commits to main since this release
0.2.0
21de883
  • Mapping region Antarctica to N/A if the date is before 2020-07-20. This is because before that date CARD:Live defaulted to Antarctica (instead of no selected region) and so there were many results showing up as Antarctica when it was likely intended these should be N/A.
  • Changed organism selection. Now there is the option to select RGI Kmer or LMAT organism results and this will impact all the figures.
  • Post-processing of LMAT organism results to make sure they do not go below the rank of species.
  • Fixed bug in select by drug class causing multiple selections to miss some samples if drug classes were found on different contigs.
  • Renamed Besthit ARO to AMR gene.
  • Added plot for viewing drug class counts, AMR genes, AMR gene families, and Resistance Mechanism.
  • Added setup.py install script.
  • Added both percent and count plots for timeline.
  • Added the ability to select a custom date range.
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