Run sequence is not preserved #8
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I think I ran into NFLabs/zeppelin#395 just now |
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I'm merging it if there's no discussion. |
asfgit
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Apr 5, 2016
### What is this PR for? Implement R and SpakR Intepreter as part of the Spark Interpreter Group. It also implements R and Scala binding (in both directions). ### What type of PR is it? [Feature] ### Todos * [ ] - Documentation * [ ] - Unit test (if relevant, as we depend on R being available on the host) * [ ] - Assess licensing (a priori ok as we don't delive anything out of ASL2, but we should corectly phrase the NOTICE as we depend on non-ASL2 comptabile licenses (R) to run the interpreter). ### Is there a relevant Jira issue? https://issues.apache.org/jira/browse/ZEPPELIN-156 SparkR support ### How should this be tested? You need R available on the host running the notebook. For Centos: yum install R R-devel For Ubuntu: apt-get install r-base r-cran-rserve Install additional R packages: ``` curl https://cran.r-project.org/src/contrib/Archive/rscala/rscala_1.0.6.tar.gz -o /tmp/rscala_1.0.6.tar.gz R CMD INSTALL /tmp/rscala_1.0.6.tar.gz R -e "install.packages('ggplot2', repos = 'http://cran.us.r-project.org')" R -e install.packages('knitr', repos = 'http://cran.us.r-project.org') ``` - Build + launch Zeppelin and test the R note. !!! you need rscala_1.0.6 (if not, you need to build with -Drscala.version=...) ### Screenshots (if appropriate) #### Simple R [](https://raw.githubusercontent.com/datalayer/zeppelin-R/rscala/_Rimg/simple-r.png) #### Plot [](https://raw.githubusercontent.com/datalayer/zeppelin-R/rscala/_Rimg/plot.png) #### Scala R Binding [](https://raw.githubusercontent.com/datalayer/zeppelin-R/rscala/_Rimg/scala-r.png) #### R Scala Binding [](https://raw.githubusercontent.com/datalayer/zeppelin-R/rscala/_Rimg/r-scala.png) #### SparkR [](https://raw.githubusercontent.com/datalayer/zeppelin-R/rscala/_Rimg/sparkr.png) ### Questions: * Does the licenses files need update? to be checked... (cfr R needs to be available to make this interpreter operational). * Is there breaking changes for older versions? No * Does this needs documentation? Yes Author: Eric Charles <[email protected]> Author: Lee moon soo <[email protected]> This patch had conflicts when merged, resolved by Committer: Lee moon soo <[email protected]> Closes #702 from echarles/rscala-z and squashes the following commits: 137040c [Eric Charles] Trigger build again 53645f6 [Eric Charles] Trigger build 519f3a9 [Eric Charles] Add back the spark.bin.download.url property for sparkr profile d1f0521 [Eric Charles] Merge with master 72ab72c [Eric Charles] Trigger travis build 151af0a [Eric Charles] Enable back the R install in travis ed70820 [Eric Charles] Merge with master ae21036 [Eric Charles] Note: unlist array passed from scala to R, patch contributed by @jeffsteinmetz ac0e16d [Eric Charles] Merge pull request #8 from Leemoonsoo/rscala-z-fix-interpreter-list-order 90c1b4d [Lee moon soo] Sort interpreter list correctly c36fe8a [Eric Charles] Return SUCCESS if result is empty 463c066 [Eric Charles] Log exception on open f6e685a [Eric Charles] Remove SparkRInterpeterTest, test is convered in ZeppelinSparkClusterTest 19ec4f3 [Eric Charles] Add back SparkRInterpreterTest.java 58227e9 [Eric Charles] Merge branch 'rscala-z-rs' into rscala-z 290289f [Eric Charles] Merge with master eb6c40c [Eric Charles] Merge remote rscala-z-rs 962d0d9 [Eric Charles] DOC: Add more visualization libraries 9b95d60 [Lee moon soo] Remove unnecessary test 894c399 [Lee moon soo] Remove SparkRInterpreterTest bac1e1b [Lee moon soo] R on travis f6661c2 [Lee moon soo] fix profile activation 1a0195f [Lee moon soo] exclude test when sparkr profile is not defined 2307115 [Lee moon soo] Make sparkr work without SPARK_HOME dcfee32 [Lee moon soo] Add test aa35a83 [Lee moon soo] Download sparkR package 1d99fa8 [Lee moon soo] Remove rscala related stuff from project fc66da9 [Lee moon soo] R -> r a122894 [Lee moon soo] render output 9df9535 [Lee moon soo] Remove rscala dependency 1e2c99b [Eric Charles] DOC: no need for r-cran-rserve, thx to @jeffsteinmetz 2300ebc [Eric Charles] Update to latest change in interpeter constructs ecf8bc4 [Eric Charles] Merge with master a119b72 [Eric Charles] Merge with remote 454c1cb [Eric Charles] Rebase on master and update test to deal with interpretercontext constructor change b30f6f4 [Eric Charles] Support HTML, TABLE and IMG display - Dynamic form in progress 89d6a3a [Eric Charles] DOC: Fix typo (contributed by @AhyoungRyu) + fix missing depencies (contributed by @btiernay on https://github.com/datalayer/datalayer-zeppelin/issues/6) a6a3695 [Eric Charles] fix SparkInterpreterTest to deal with previous commit chanching the returned html 35486c7 [Eric Charles] Always return html preview in case of pure text a0306fc [Eric Charles] Fix the expected html value for test 47eec88 [Eric Charles] Fix code format to make checkstyle happy f963e1c [Eric Charles] polish examples with title 6cf8615 [Eric Charles] Make it work also on chromium 7b04b6b [Eric Charles] Support ggplot2 output size https://github.com/datalayer/zeppelin-R/issues/2 17d6b0d [Eric Charles] Less test in the SparkRInterpreterTest f4aac04 [Eric Charles] Add interactive visualization example 816f4d9 [Eric Charles] Run only one test method and see Travis reaction 702556f [Eric Charles] RAT: Disabel RAT check on downloaded rscala folder d5538a2 [Eric Charles] update pom to download rscala on build 40efe33 [Eric Charles] Add test for SparkRInterpreter 09bb458 [Eric Charles] Use java factory to allow mockito usage 5385adb [Eric Charles] Add jar in R folder c0063fc [Eric Charles] Ignore downloaded rscala 4d5cfa5 [Eric Charles] Initial documentation for R Interpreter 3e24d02 [Eric Charles] Add license for rscala c88a914 [Eric Charles] Remove rscala jar 554bcb6 [Eric Charles] Add README.md placeholder for rscala lib folder 40b4ec6 [Eric Charles] Remove png files and restore README.md 220fe51 [Eric Charles] Make rscala configurable in the spark-dependencies module 15375eb [Eric Charles] Add SparRInterpreter implementation 4161619 [Eric Charles] Support HTML, TABLE and IMG display - Dynamic form in progress 8e635e1 [Eric Charles] DOC: Fix typo (contributed by @AhyoungRyu) + fix missing depencies (contributed by @btiernay on https://github.com/datalayer/datalayer-zeppelin/issues/6) 9a988f9 [Eric Charles] fix SparkInterpreterTest to deal with previous commit chanching the returned html 28fc9b2 [Eric Charles] Always return html preview in case of pure text e8ed8dd [Eric Charles] Fix the expected html value for test facc682 [Eric Charles] Fix code format to make checkstyle happy 9b168ff [Eric Charles] polish examples with title 8b059c4 [Eric Charles] Make it work also on chromium 66c3545 [Eric Charles] Support ggplot2 output size https://github.com/datalayer/zeppelin-R/issues/2 3ae0bc1 [Eric Charles] Less test in the SparkRInterpreterTest b9b2787 [Eric Charles] Add interactive visualization example 9218d65 [Eric Charles] Run only one test method and see Travis reaction ee6e43b [Eric Charles] RAT: Disabel RAT check on downloaded rscala folder 8d664f6 [Eric Charles] update pom to download rscala on build 21668b3 [Eric Charles] Add test for SparkRInterpreter 068ac24 [Eric Charles] Use java factory to allow mockito usage caf157b [Eric Charles] Add jar in R folder 1eddadb [Eric Charles] Ignore downloaded rscala 0af2bec [Eric Charles] Initial documentation for R Interpreter 8e3c997 [Eric Charles] Add license for rscala 7a95ef4 [Eric Charles] Remove rscala jar b8ae4eb [Eric Charles] Add README.md placeholder for rscala lib folder aa6a7a1 [Eric Charles] Remove png files and restore README.md 9312a0c [Eric Charles] Make rscala configurable in the spark-dependencies module 363b244 [Eric Charles] Add SparRInterpreter implementation
onkarshedge
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May 11, 2016
### What is this PR for? Implement R and SpakR Intepreter as part of the Spark Interpreter Group. It also implements R and Scala binding (in both directions). ### What type of PR is it? [Feature] ### Todos * [ ] - Documentation * [ ] - Unit test (if relevant, as we depend on R being available on the host) * [ ] - Assess licensing (a priori ok as we don't delive anything out of ASL2, but we should corectly phrase the NOTICE as we depend on non-ASL2 comptabile licenses (R) to run the interpreter). ### Is there a relevant Jira issue? https://issues.apache.org/jira/browse/ZEPPELIN-156 SparkR support ### How should this be tested? You need R available on the host running the notebook. For Centos: yum install R R-devel For Ubuntu: apt-get install r-base r-cran-rserve Install additional R packages: ``` curl https://cran.r-project.org/src/contrib/Archive/rscala/rscala_1.0.6.tar.gz -o /tmp/rscala_1.0.6.tar.gz R CMD INSTALL /tmp/rscala_1.0.6.tar.gz R -e "install.packages('ggplot2', repos = 'http://cran.us.r-project.org')" R -e install.packages('knitr', repos = 'http://cran.us.r-project.org') ``` - Build + launch Zeppelin and test the R note. !!! you need rscala_1.0.6 (if not, you need to build with -Drscala.version=...) ### Screenshots (if appropriate) #### Simple R [](https://raw.githubusercontent.com/datalayer/zeppelin-R/rscala/_Rimg/simple-r.png) #### Plot [](https://raw.githubusercontent.com/datalayer/zeppelin-R/rscala/_Rimg/plot.png) #### Scala R Binding [](https://raw.githubusercontent.com/datalayer/zeppelin-R/rscala/_Rimg/scala-r.png) #### R Scala Binding [](https://raw.githubusercontent.com/datalayer/zeppelin-R/rscala/_Rimg/r-scala.png) #### SparkR [](https://raw.githubusercontent.com/datalayer/zeppelin-R/rscala/_Rimg/sparkr.png) ### Questions: * Does the licenses files need update? to be checked... (cfr R needs to be available to make this interpreter operational). * Is there breaking changes for older versions? No * Does this needs documentation? Yes Author: Eric Charles <[email protected]> Author: Lee moon soo <[email protected]> This patch had conflicts when merged, resolved by Committer: Lee moon soo <[email protected]> Closes apache#702 from echarles/rscala-z and squashes the following commits: 137040c [Eric Charles] Trigger build again 53645f6 [Eric Charles] Trigger build 519f3a9 [Eric Charles] Add back the spark.bin.download.url property for sparkr profile d1f0521 [Eric Charles] Merge with master 72ab72c [Eric Charles] Trigger travis build 151af0a [Eric Charles] Enable back the R install in travis ed70820 [Eric Charles] Merge with master ae21036 [Eric Charles] Note: unlist array passed from scala to R, patch contributed by @jeffsteinmetz ac0e16d [Eric Charles] Merge pull request apache#8 from Leemoonsoo/rscala-z-fix-interpreter-list-order 90c1b4d [Lee moon soo] Sort interpreter list correctly c36fe8a [Eric Charles] Return SUCCESS if result is empty 463c066 [Eric Charles] Log exception on open f6e685a [Eric Charles] Remove SparkRInterpeterTest, test is convered in ZeppelinSparkClusterTest 19ec4f3 [Eric Charles] Add back SparkRInterpreterTest.java 58227e9 [Eric Charles] Merge branch 'rscala-z-rs' into rscala-z 290289f [Eric Charles] Merge with master eb6c40c [Eric Charles] Merge remote rscala-z-rs 962d0d9 [Eric Charles] DOC: Add more visualization libraries 9b95d60 [Lee moon soo] Remove unnecessary test 894c399 [Lee moon soo] Remove SparkRInterpreterTest bac1e1b [Lee moon soo] R on travis f6661c2 [Lee moon soo] fix profile activation 1a0195f [Lee moon soo] exclude test when sparkr profile is not defined 2307115 [Lee moon soo] Make sparkr work without SPARK_HOME dcfee32 [Lee moon soo] Add test aa35a83 [Lee moon soo] Download sparkR package 1d99fa8 [Lee moon soo] Remove rscala related stuff from project fc66da9 [Lee moon soo] R -> r a122894 [Lee moon soo] render output 9df9535 [Lee moon soo] Remove rscala dependency 1e2c99b [Eric Charles] DOC: no need for r-cran-rserve, thx to @jeffsteinmetz 2300ebc [Eric Charles] Update to latest change in interpeter constructs ecf8bc4 [Eric Charles] Merge with master a119b72 [Eric Charles] Merge with remote 454c1cb [Eric Charles] Rebase on master and update test to deal with interpretercontext constructor change b30f6f4 [Eric Charles] Support HTML, TABLE and IMG display - Dynamic form in progress 89d6a3a [Eric Charles] DOC: Fix typo (contributed by @AhyoungRyu) + fix missing depencies (contributed by @btiernay on https://github.com/datalayer/datalayer-zeppelin/issues/6) a6a3695 [Eric Charles] fix SparkInterpreterTest to deal with previous commit chanching the returned html 35486c7 [Eric Charles] Always return html preview in case of pure text a0306fc [Eric Charles] Fix the expected html value for test 47eec88 [Eric Charles] Fix code format to make checkstyle happy f963e1c [Eric Charles] polish examples with title 6cf8615 [Eric Charles] Make it work also on chromium 7b04b6b [Eric Charles] Support ggplot2 output size https://github.com/datalayer/zeppelin-R/issues/2 17d6b0d [Eric Charles] Less test in the SparkRInterpreterTest f4aac04 [Eric Charles] Add interactive visualization example 816f4d9 [Eric Charles] Run only one test method and see Travis reaction 702556f [Eric Charles] RAT: Disabel RAT check on downloaded rscala folder d5538a2 [Eric Charles] update pom to download rscala on build 40efe33 [Eric Charles] Add test for SparkRInterpreter 09bb458 [Eric Charles] Use java factory to allow mockito usage 5385adb [Eric Charles] Add jar in R folder c0063fc [Eric Charles] Ignore downloaded rscala 4d5cfa5 [Eric Charles] Initial documentation for R Interpreter 3e24d02 [Eric Charles] Add license for rscala c88a914 [Eric Charles] Remove rscala jar 554bcb6 [Eric Charles] Add README.md placeholder for rscala lib folder 40b4ec6 [Eric Charles] Remove png files and restore README.md 220fe51 [Eric Charles] Make rscala configurable in the spark-dependencies module 15375eb [Eric Charles] Add SparRInterpreter implementation 4161619 [Eric Charles] Support HTML, TABLE and IMG display - Dynamic form in progress 8e635e1 [Eric Charles] DOC: Fix typo (contributed by @AhyoungRyu) + fix missing depencies (contributed by @btiernay on https://github.com/datalayer/datalayer-zeppelin/issues/6) 9a988f9 [Eric Charles] fix SparkInterpreterTest to deal with previous commit chanching the returned html 28fc9b2 [Eric Charles] Always return html preview in case of pure text e8ed8dd [Eric Charles] Fix the expected html value for test facc682 [Eric Charles] Fix code format to make checkstyle happy 9b168ff [Eric Charles] polish examples with title 8b059c4 [Eric Charles] Make it work also on chromium 66c3545 [Eric Charles] Support ggplot2 output size https://github.com/datalayer/zeppelin-R/issues/2 3ae0bc1 [Eric Charles] Less test in the SparkRInterpreterTest b9b2787 [Eric Charles] Add interactive visualization example 9218d65 [Eric Charles] Run only one test method and see Travis reaction ee6e43b [Eric Charles] RAT: Disabel RAT check on downloaded rscala folder 8d664f6 [Eric Charles] update pom to download rscala on build 21668b3 [Eric Charles] Add test for SparkRInterpreter 068ac24 [Eric Charles] Use java factory to allow mockito usage caf157b [Eric Charles] Add jar in R folder 1eddadb [Eric Charles] Ignore downloaded rscala 0af2bec [Eric Charles] Initial documentation for R Interpreter 8e3c997 [Eric Charles] Add license for rscala 7a95ef4 [Eric Charles] Remove rscala jar b8ae4eb [Eric Charles] Add README.md placeholder for rscala lib folder aa6a7a1 [Eric Charles] Remove png files and restore README.md 9312a0c [Eric Charles] Make rscala configurable in the spark-dependencies module 363b244 [Eric Charles] Add SparRInterpreter implementation
asfgit
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Sep 27, 2016
](https://raw.githubusercontent.com/datalayer/zeppelin-R/rscala/_Rimg/simple-r.png){kind=link}
](https://raw.githubusercontent.com/datalayer/zeppelin-R/rscala/_Rimg/plot.png){kind=link}
](https://raw.githubusercontent.com/datalayer/zeppelin-R/rscala/_Rimg/scala-r.png){kind=link}
](https://raw.githubusercontent.com/datalayer/zeppelin-R/rscala/_Rimg/r-scala.png){kind=link}
](https://raw.githubusercontent.com/datalayer/zeppelin-R/rscala/_Rimg/sparkr.png){kind=link}
## What is this PR for? The PR is a interpreter for [Apache Beam](http://beam.incubator.apache.org) which is an open source unified platform for data processing pipelines. A pipeline can be build using one of the Beam SDKs. The execution of the pipeline is done by different Runners . Currently, Beam supports Apache Flink Runner, Apache Spark Runner, and Google Dataflow Runner. ### What type of PR is it? - Feature ### Todos * Test case * Review Comments * Documentation ### What is the Jira issue? * [ZEPPELIN-682] ### How should this be tested? - Start the Zeppelin server - The prefix of interpreter is `%beam` and then write your code with required imports and the runner ### Screenshots (if appropriate)   ### Questions: * Does the licenses files need update? no * Is there breaking changes for older versions? no * Does this needs documentation? yes Author: mahmoudelgamal <[email protected]> Author: mfelgamal <[email protected]> Author: Fouad <[email protected]> Closes #1334 from mfelgamal/beam-interpreter-static-repl-7 and squashes the following commits: da66c27 [mahmoudelgamal] Modify condition of checking static modifier 55c1322 [mahmoudelgamal] set spark version to 1.6.2 and throw original exception 27d7690 [mahmoudelgamal] set spark version to 1.6.1 and some modifications 750041c [mahmoudelgamal] Add readme file and modify pom file and travis.yml ca88f94 [mahmoudelgamal] edit pom file and .travis.yml 3d65427 [mahmoudelgamal] update .travis.yml file f19f98d [mahmoudelgamal] Make easy example with imports ands some modifications 74c14ca [mahmoudelgamal] Update the licenses acc7afb [mahmoudelgamal] Change beam to version 0.2.0 e821614 [mahmoudelgamal] Removing hadoop-core and print stack trace to failure 5cb7c7b [mahmoudelgamal] Add some changes to doc and pom file 75fc4f7 [mahmoudelgamal] add interpreter to navigation.html and remove extra spaces and lines 9b1b385 [mahmoudelgamal] put beam in alphabetical order 9c1e25d [mahmoudelgamal] Adding changes like logging and conventions and license 2aa6d65 [mahmoudelgamal] changing class name to StaticRepl and adding some modifications 7cf25fb [mahmoudelgamal] Adding some tests 3c5038f [mahmoudelgamal] Modifying the documentation 5695077 [mahmoudelgamal] Modifying pom file and Making documentation 26fc59b [mahmoudelgamal] Refactoring of the code 3a2bd85 [mahmoudelgamal] Adding the beam to zeppelin 7 ab7ee2d [mahmoudelgamal] beam interpreter 85957ff [mfelgamal] Merge pull request #10 from apache/master 852c3d3 [mfelgamal] Merge pull request #9 from apache/master a4bcc0d [mfelgamal] Merge pull request #8 from apache/master 858f1e1 [mfelgamal] Merge pull request #7 from apache/master 03a1e80 [mfelgamal] Merge pull request #4 from apache/master 2586651 [Fouad] Merge pull request #2 from apache/master
pedrozatta
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Oct 27, 2016
## What is this PR for? The PR is a interpreter for [Apache Beam](http://beam.incubator.apache.org) which is an open source unified platform for data processing pipelines. A pipeline can be build using one of the Beam SDKs. The execution of the pipeline is done by different Runners . Currently, Beam supports Apache Flink Runner, Apache Spark Runner, and Google Dataflow Runner. ### What type of PR is it? - Feature ### Todos * Test case * Review Comments * Documentation ### What is the Jira issue? * [ZEPPELIN-682] ### How should this be tested? - Start the Zeppelin server - The prefix of interpreter is `%beam` and then write your code with required imports and the runner ### Screenshots (if appropriate)   ### Questions: * Does the licenses files need update? no * Is there breaking changes for older versions? no * Does this needs documentation? yes Author: mahmoudelgamal <[email protected]> Author: mfelgamal <[email protected]> Author: Fouad <[email protected]> Closes apache#1334 from mfelgamal/beam-interpreter-static-repl-7 and squashes the following commits: da66c27 [mahmoudelgamal] Modify condition of checking static modifier 55c1322 [mahmoudelgamal] set spark version to 1.6.2 and throw original exception 27d7690 [mahmoudelgamal] set spark version to 1.6.1 and some modifications 750041c [mahmoudelgamal] Add readme file and modify pom file and travis.yml ca88f94 [mahmoudelgamal] edit pom file and .travis.yml 3d65427 [mahmoudelgamal] update .travis.yml file f19f98d [mahmoudelgamal] Make easy example with imports ands some modifications 74c14ca [mahmoudelgamal] Update the licenses acc7afb [mahmoudelgamal] Change beam to version 0.2.0 e821614 [mahmoudelgamal] Removing hadoop-core and print stack trace to failure 5cb7c7b [mahmoudelgamal] Add some changes to doc and pom file 75fc4f7 [mahmoudelgamal] add interpreter to navigation.html and remove extra spaces and lines 9b1b385 [mahmoudelgamal] put beam in alphabetical order 9c1e25d [mahmoudelgamal] Adding changes like logging and conventions and license 2aa6d65 [mahmoudelgamal] changing class name to StaticRepl and adding some modifications 7cf25fb [mahmoudelgamal] Adding some tests 3c5038f [mahmoudelgamal] Modifying the documentation 5695077 [mahmoudelgamal] Modifying pom file and Making documentation 26fc59b [mahmoudelgamal] Refactoring of the code 3a2bd85 [mahmoudelgamal] Adding the beam to zeppelin 7 ab7ee2d [mahmoudelgamal] beam interpreter 85957ff [mfelgamal] Merge pull request apache#10 from apache/master 852c3d3 [mfelgamal] Merge pull request apache#9 from apache/master a4bcc0d [mfelgamal] Merge pull request apache#8 from apache/master 858f1e1 [mfelgamal] Merge pull request apache#7 from apache/master 03a1e80 [mfelgamal] Merge pull request apache#4 from apache/master 2586651 [Fouad] Merge pull request apache#2 from apache/master
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This PR came from ZEPL/zeppelin#397
After ZEPL/zeppelin#364, order of submitted job to the remote interpreter is not preserved.
Result is, when user run a lot of paragraphs in a short time, they run in random order(like click run 'Run all paragraphs). https://github.com/NFLabs/zeppelin/issues/395 is one of the possible problem.
this PR adds some unittests and fix the problem.
Ready to merge.