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[numpy] Numpy dot (#14831)
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* Numpy Dot case 1-4 + case 3.5 forward and 0.5 backward

* Backward computation and test coverage
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haojin2 authored and reminisce committed Jun 4, 2019
1 parent 355254e commit 7a12654
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2 changes: 1 addition & 1 deletion python/mxnet/test_utils.py
Original file line number Diff line number Diff line change
Expand Up @@ -833,7 +833,7 @@ def as_stype(var, stype, dtype):
continue
stype = executor.arg_dict[k].stype
old_value = v.copy()
for i in range(np.prod(v.shape)):
for i in range(int(np.prod(v.shape))):
# inplace update
v.ravel()[i] += eps/2.0
executor.arg_dict[k][:] = as_stype(v, stype, dtype=dtype)
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244 changes: 244 additions & 0 deletions src/operator/numpy/np_dot-inl.h
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/*
* Licensed to the Apache Software Foundation (ASF) under one
* or more contributor license agreements. See the NOTICE file
* distributed with this work for additional information
* regarding copyright ownership. The ASF licenses this file
* to you under the Apache License, Version 2.0 (the
* "License"); you may not use this file except in compliance
* with the License. You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing,
* software distributed under the License is distributed on an
* "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
* KIND, either express or implied. See the License for the
* specific language governing permissions and limitations
* under the License.
*/

/*!
* \file np_dot-inl.h
* \brief Function definition of matrix numpy-compatible dot operator
*/

#ifndef MXNET_OPERATOR_NUMPY_NP_DOT_INL_H_
#define MXNET_OPERATOR_NUMPY_NP_DOT_INL_H_

#include <mxnet/operator_util.h>
#include <vector>
#include "../tensor/dot-inl.h"
#include "../tensor/elemwise_binary_op.h"
#include "../tensor/broadcast_reduce_op.h"

namespace mxnet {
namespace op {

template<typename xpu>
inline void MMImpl(const OpContext& ctx,
const TBlob& a,
const TBlob& b,
const TBlob& out,
const OpReqType req,
const bool trans_a = false,
const bool trans_b = false) {
using namespace mshadow;
using namespace mshadow_op;

Stream<xpu> *s = ctx.get_stream<xpu>();
index_t ma, na, mb, nb;
na = a.size(a.ndim() - 1);
ma = a.Size() / na;
mb = b.size(0);
nb = b.Size() / mb;
MSHADOW_REAL_TYPE_SWITCH(out.type_flag_, DType, {
Tensor<xpu, 2, DType> input0 = a.get_with_shape<xpu, 2, DType>(Shape2(ma, na), s);
Tensor<xpu, 2, DType> input1 = b.get_with_shape<xpu, 2, DType>(Shape2(mb, nb), s);
Tensor<xpu, 2, DType> output0;
if (trans_a && trans_b) {
output0 = out.get_with_shape<xpu, 2, DType>(Shape2(na, mb), s);
ASSIGN_DISPATCH(output0, req, dot(input0.T(), input1.T()));
} else if (!trans_a && trans_b) {
output0 = out.get_with_shape<xpu, 2, DType>(Shape2(ma, mb), s);
ASSIGN_DISPATCH(output0, req, dot(input0, input1.T()));
} else if (trans_a && !trans_b) {
output0 = out.get_with_shape<xpu, 2, DType>(Shape2(na, nb), s);
ASSIGN_DISPATCH(output0, req, dot(input0.T(), input1));
} else {
output0 = out.get_with_shape<xpu, 2, DType>(Shape2(ma, nb), s);
ASSIGN_DISPATCH(output0, req, dot(input0, input1));
}
});
}

template<int req>
struct scalar_mul_kernel {
template<typename DType>
MSHADOW_XINLINE static void Map(int i, DType *out, const DType* tensor, const DType *scalar) {
KERNEL_ASSIGN(out[i], req, tensor[i] * scalar[0]);
}
};

template<typename xpu>
inline void NumpyDotForward(const nnvm::NodeAttrs& attrs,
const OpContext& ctx,
const std::vector<TBlob>& inputs,
const std::vector<OpReqType>& req,
const std::vector<TBlob>& outputs) {
using namespace mshadow;
using namespace mxnet_op;

CHECK_EQ(inputs.size(), 2U);
CHECK_EQ(outputs.size(), 1U);

if (req[0] == kNullOp) return;
const TBlob& a = inputs[0];
const TBlob& b = inputs[1];
const TBlob& out = outputs[0];
const mxnet::TShape a_shape = a.shape_;
const mxnet::TShape b_shape = b.shape_;

Stream<xpu> *s = ctx.get_stream<xpu>();
CHECK_EQ(out.type_flag_, a.type_flag_)
<< "Binary function only support input/output with the same type";
CHECK_EQ(out.type_flag_, b.type_flag_)
<< "Binary function only support input/output with the same type";
CHECK(out.type_flag_ == kFloat32 || out.type_flag_ == kFloat64 ||
(out.type_flag_ == kFloat16 && ctx.run_ctx.ctx.dev_mask() == mshadow::gpu::kDevMask))
<< "dot only supports float32/float64 for CPU, and float16/float32/float64 for GPU";
MSHADOW_REAL_TYPE_SWITCH(out.type_flag_, DType, {
if (a_shape.ndim() == 1 && b_shape.ndim() == 1) {
// Case 1: both 1-D arrays, inner product of vectors
if (out.type_flag_ == kFloat16) {
MMImpl<xpu>(ctx, a, b, out, req[0]);
} else {
CHECK_NE(req[0], kAddTo) << "AddTo not yet supported";
Tensor<xpu, 1, DType> mock_1d = out.get_with_shape<xpu, 1, DType>(Shape1(1), s);
VectorDot(mock_1d, a.get<xpu, 1, DType>(s), b.get<xpu, 1, DType>(s));
}
} else if (a_shape.ndim() == 2 && b_shape.ndim() == 2) {
// Case 2: both 2-D arrays, matrix multiplication
MMImpl<xpu>(ctx, a, b, out, req[0]);
} else if (a_shape.ndim() == 0 && b_shape.ndim() == 0) {
// Case 3: both 0-D scalars, equivalent to multiply
Tensor<xpu, 1, DType> a_data = a.get_with_shape<xpu, 1, DType>(Shape1(1), s);
Tensor<xpu, 1, DType> b_data = b.get_with_shape<xpu, 1, DType>(Shape1(1), s);
Tensor<xpu, 1, DType> out_data = out.get_with_shape<xpu, 1, DType>(Shape1(1), s);
ASSIGN_DISPATCH(out_data, req[0], a_data * b_data);
} else if (a_shape.ndim() == 0 || b_shape.ndim() == 0) {
const DType* tensor = (a_shape.ndim() == 0) ? b.dptr<DType>() : a.dptr<DType>();
const DType* scalar = (a_shape.ndim() == 0) ? a.dptr<DType>() : b.dptr<DType>();
// Case 3.5: either of them is a scalar, just scale by one of them
MXNET_ASSIGN_REQ_SWITCH(req[0], Req, {
Kernel<scalar_mul_kernel<Req>, xpu>::Launch(
s, out.Size(), out.dptr<DType>(), tensor, scalar);
});
} else if (b_shape.ndim() == 1) {
// Case 4: a is N-D array and b is 1-D array, sum product over the last axis
MMImpl<xpu>(ctx, a, b, out, req[0]);
} else {
// TODO(haojin2): To be implemented...
// Case 5: a is N-D array and b is M-D array, sum product over the last axis
// of a and the 2nd-to-last axis of b
LOG(FATAL) << "Case 5 not implemented yet...";
}
});
}

template<typename xpu>
inline void NumpyDotBackward(const nnvm::NodeAttrs& attrs,
const OpContext& ctx,
const std::vector<TBlob>& inputs,
const std::vector<OpReqType>& req,
const std::vector<TBlob>& outputs) {
using namespace mshadow;
using namespace mshadow_op;

CHECK_EQ(inputs.size(), 3U);
CHECK_EQ(outputs.size(), 2U);

const TBlob& ograd = inputs[0];
const TBlob& a = inputs[1];
const TBlob& b = inputs[2];
const TBlob& grad_a = outputs[0];
const TBlob& grad_b = outputs[1];
const mxnet::TShape a_shape = a.shape_;
const mxnet::TShape b_shape = b.shape_;

Stream<xpu> *s = ctx.get_stream<xpu>();
MSHADOW_REAL_TYPE_SWITCH(ograd.type_flag_, DType, {
if (a_shape.ndim() == 1 && b_shape.ndim() == 1) {
// Case 1: both 1-D arrays, inner product of vectors
Tensor<xpu, 1, DType> out_grad = ograd.get_with_shape<xpu, 1, DType>(Shape1(1), s);
Tensor<xpu, 1, DType> a_data = a.get<xpu, 1, DType>(s);
Tensor<xpu, 1, DType> b_data = b.get<xpu, 1, DType>(s);
Tensor<xpu, 1, DType> a_grad = grad_a.get<xpu, 1, DType>(s);
Tensor<xpu, 1, DType> b_grad = grad_b.get<xpu, 1, DType>(s);
ASSIGN_DISPATCH(b_grad, req[1],
broadcast_scalar(out_grad, a_data.shape_) * a_data);
ASSIGN_DISPATCH(a_grad, req[0],
broadcast_scalar(out_grad, a_data.shape_) * b_data);
} else if (a_shape.ndim() == 2 && b_shape.ndim() == 2) {
// Case 2: both 2-D arrays, matrix multiplication
MMImpl<xpu>(ctx, a, ograd, grad_b, req[1], true, false);
MMImpl<xpu>(ctx, ograd, b, grad_a, req[0], false, true);
} else if (a_shape.ndim() == 0 && b_shape.ndim() == 0) {
// Case 3: both 0-D scalars, equivalent to multiply
Tensor<xpu, 1, DType> out_grad = ograd.get_with_shape<xpu, 1, DType>(Shape1(1), s);
Tensor<xpu, 1, DType> a_data = a.get_with_shape<xpu, 1, DType>(Shape1(1), s);
Tensor<xpu, 1, DType> b_data = b.get_with_shape<xpu, 1, DType>(Shape1(1), s);
Tensor<xpu, 1, DType> a_grad = grad_a.get_with_shape<xpu, 1, DType>(Shape1(1), s);
Tensor<xpu, 1, DType> b_grad = grad_b.get_with_shape<xpu, 1, DType>(Shape1(1), s);
ASSIGN_DISPATCH(a_grad, req[0], b_data * out_grad);
ASSIGN_DISPATCH(b_grad, req[1], a_data * out_grad);
} else if (a_shape.ndim() == 0 || b_shape.ndim() == 0) {
// Case 3.5: either of them is a scalar, just scale by one of them
const TBlob& tensor = (a_shape.ndim() == 0) ? b : a;
const TBlob& tensor_grad = (a_shape.ndim() == 0) ? grad_b : grad_a;
const TBlob& scalar = (a_shape.ndim() == 0) ? a : b;
const TBlob& scalar_grad = (a_shape.ndim() == 0) ? grad_a : grad_b;
Tensor<xpu, 1, DType> scalar_ = scalar.get_with_shape<xpu, 1, DType>(Shape1(1), s);
Tensor<xpu, 1, DType> scalar_grad_ = scalar_grad.get_with_shape<xpu, 1, DType>(Shape1(1), s);
Tensor<xpu, 1, DType> tensor_ = tensor.FlatTo1D<xpu, DType>(s);
Tensor<xpu, 1, DType> tensor_grad_ = tensor_grad.FlatTo1D<xpu, DType>(s);
Tensor<xpu, 1, DType> ograd_ = ograd.FlatTo1D<xpu, DType>(s);
const OpReqType& tensor_req = (a_shape.ndim() == 0) ? req[1] : req[0];
const OpReqType& scalar_req = (a_shape.ndim() == 0) ? req[0] : req[1];
ASSIGN_DISPATCH(tensor_grad_, tensor_req,
broadcast_scalar(scalar_, tensor_grad_.shape_) * ograd_);
// TODO(haojin2): Get rid of temporary space.
Tensor<xpu, 1, DType> temp_space =
ctx.requested[0].get_space_typed<xpu, 1, DType>(Shape1(ograd.shape_.Size()), s);
ASSIGN_DISPATCH(temp_space, kWriteTo, tensor_ * ograd_);

ReduceAxesComputeImpl<xpu, mshadow_op::sum, true>(
ctx, {TBlob(temp_space)}, {scalar_req}, {TBlob(scalar_grad_)}, scalar_grad_.shape_);
} else if (b_shape.ndim() == 1) {
size_t na = a_shape[a_shape.ndim() - 1];
size_t ma = a_shape.Size() / na;
Tensor<xpu, 2, DType> a_ =
a.get_with_shape<xpu, 2, DType>(Shape2(ma, na), s);
Tensor<xpu, 2, DType> b_ =
b.get_with_shape<xpu, 2, DType>(Shape2(b_shape.Size(), 1), s);
Tensor<xpu, 2, DType> grad_a_ =
grad_a.get_with_shape<xpu, 2, DType>(Shape2(ma, na), s);
Tensor<xpu, 2, DType> grad_b_ =
grad_b.get_with_shape<xpu, 2, DType>(Shape2(b_shape.Size(), 1), s);
Tensor<xpu, 2, DType> ograd_ =
ograd.get_with_shape<xpu, 2, DType>(Shape2(ograd.shape_.Size(), 1), s);
// Case 4: a is N-D array and b is 1-D array, sum product over the last axis
MMImpl<xpu>(ctx, TBlob(a_), TBlob(ograd_), TBlob(grad_b_), req[1], true, false);
MMImpl<xpu>(ctx, TBlob(ograd_), TBlob(b_), TBlob(grad_a_), req[0], false, true);
} else {
// TODO(haojin2): To be implemented...
// Case 5: a is N-D array and b is M-D array, sum product over the last axis
// of a and the 2nd-to-last axis of b
LOG(FATAL) << "Case 5 not implemented yet...";
}
});
}

} // namespace op
} // namespace mxnet

#endif // MXNET_OPERATOR_NUMPY_NP_DOT_INL_H_
120 changes: 120 additions & 0 deletions src/operator/numpy/np_dot.cc
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@@ -0,0 +1,120 @@
/*
* Licensed to the Apache Software Foundation (ASF) under one
* or more contributor license agreements. See the NOTICE file
* distributed with this work for additional information
* regarding copyright ownership. The ASF licenses this file
* to you under the Apache License, Version 2.0 (the
* "License"); you may not use this file except in compliance
* with the License. You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing,
* software distributed under the License is distributed on an
* "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
* KIND, either express or implied. See the License for the
* specific language governing permissions and limitations
* under the License.
*/

/*!
* \file np_dot.cc
* \brief CPU Implementation of numpy-compatible dot
*/

#include "./np_dot-inl.h"

namespace mxnet {
namespace op {

inline bool NumpyDotShape(const nnvm::NodeAttrs& attrs,
mxnet::ShapeVector *in_attrs,
mxnet::ShapeVector *out_attrs) {
CHECK_EQ(in_attrs->size(), 2U);
CHECK_EQ(out_attrs->size(), 1U);

const mxnet::TShape& a_shape = in_attrs->at(0);
const mxnet::TShape& b_shape = in_attrs->at(1);

if (!shape_is_known(a_shape) || !shape_is_known(b_shape)) {
return false;
}

if (a_shape.ndim() == 1 && b_shape.ndim() == 1) {
// Case 1: both 1-D arrays, inner product of vectors
CHECK_EQ(a_shape[0], b_shape[0]);
SHAPE_ASSIGN_CHECK(*out_attrs, 0, mxnet::TShape(0, 0));
} else if (a_shape.ndim() == 2 && b_shape.ndim() == 2) {
// Case 2: both 2-D arrays, matrix multiplication
CHECK_EQ(a_shape[1], b_shape[0]);
mxnet::TShape mm_shape(2, 0);
mm_shape[0] = a_shape[0];
mm_shape[1] = b_shape[1];
SHAPE_ASSIGN_CHECK(*out_attrs, 0, mm_shape);
} else if (a_shape.ndim() == 0 || b_shape.ndim() == 0) {
// Case 3 + 3.5: either of them is a scalar, just scale by one of them
mxnet::TShape oshape = (a_shape.ndim() == 0) ? b_shape : a_shape;
SHAPE_ASSIGN_CHECK(*out_attrs, 0, oshape);
} else if (b_shape.ndim() == 1) {
// Case 4: a is N-D array and b is 1-D array, sum product over the last axis
CHECK_EQ(a_shape[a_shape.ndim() - 1], b_shape[0]);
mxnet::TShape out_shape(a_shape.ndim() - 1, 0);
for (int i = 0; i < a_shape.ndim() - 1; ++i) {
out_shape[i] = a_shape[i];
}
SHAPE_ASSIGN_CHECK(*out_attrs, 0, out_shape);
} else {
// Case 5: a is N-D array and b is M-D array, sum product over the last axis
// of a and the 2nd-to-last axis of b
LOG(FATAL) << "Case 5 not implemented yet...";
}
return true;
}

NNVM_REGISTER_OP(_numpy_dot)
.describe(R"doc(Dot product of two arrays. Specifically,
- If both a and b are 1-D arrays, it is inner product of vectors.
- If both a and b are 2-D arrays, it is matrix multiplication.
- If either a or b is 0-D (scalar), it is equivalent to multiply and using numpy.multiply(a, b) or a * b is preferred.
- If a is an N-D array and b is a 1-D array, it is a sum product over the last axis of a and b.
- If a is an N-D array and b is an M-D array (where M>=2), it is a sum product over the last axis of a and the second-to-last axis of b:
Example ::
dot(a, b)[i,j,k,m] = sum(a[i,j,:] * b[k,:,m])
)doc" ADD_FILELINE)
.set_num_inputs(2)
.set_num_outputs(1)
.set_attr<nnvm::FListInputNames>("FListInputNames",
[](const NodeAttrs& attrs) {
return std::vector<std::string>{"a", "b"};
})
.set_attr<mxnet::FInferShape>("FInferShape", NumpyDotShape)
.set_attr<nnvm::FInferType>("FInferType", ElemwiseType<2, 1>)
.set_attr<FResourceRequest>("FResourceRequest",
[](const NodeAttrs& attrs) {
return std::vector<ResourceRequest>{ResourceRequest::kTempSpace};
})
.set_attr<FCompute>("FCompute<cpu>", NumpyDotForward<cpu>)
.set_attr<nnvm::FGradient>("FGradient", ElemwiseGradUseIn{"_backward_np_dot"})
.add_argument("a", "NDArray-or-Symbol", "First input")
.add_argument("b", "NDArray-or-Symbol", "Second input");

NNVM_REGISTER_OP(_backward_np_dot)
.set_num_inputs(3)
.set_num_outputs(2)
.set_attr<nnvm::TIsBackward>("TIsBackward", true)
.set_attr<FResourceRequest>("FResourceRequest",
[](const NodeAttrs& attrs) {
return std::vector<ResourceRequest>{ResourceRequest::kTempSpace};
})
.set_attr<FCompute>("FCompute<cpu>", NumpyDotBackward<cpu>);

} // namespace op
} // namespace mxnet
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