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[ARROW] Arrow serialization should not introduce extra shuffle for outermost limit #4662
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,133 @@ | ||
| /* | ||
| * Licensed to the Apache Software Foundation (ASF) under one or more | ||
| * contributor license agreements. See the NOTICE file distributed with | ||
| * this work for additional information regarding copyright ownership. | ||
| * The ASF licenses this file to You under the Apache License, Version 2.0 | ||
| * (the "License"); you may not use this file except in compliance with | ||
| * the License. You may obtain a copy of the License at | ||
| * | ||
| * http://www.apache.org/licenses/LICENSE-2.0 | ||
| * | ||
| * Unless required by applicable law or agreed to in writing, software | ||
| * distributed under the License is distributed on an "AS IS" BASIS, | ||
| * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. | ||
| * See the License for the specific language governing permissions and | ||
| * limitations under the License. | ||
| */ | ||
|
|
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| package org.apache.spark.sql.execution.arrow | ||
|
|
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| import scala.collection.mutable.ArrayBuffer | ||
|
|
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| import org.apache.spark.sql.catalyst.{InternalRow, SQLConfHelper} | ||
| import org.apache.spark.sql.execution.CollectLimitExec | ||
|
|
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| object ArrowCollectUtils extends SQLConfHelper { | ||
|
|
||
| type Batch = (Array[Byte], Long) | ||
|
|
||
| /** | ||
| * Forked from `org.apache.spark.sql.execution.SparkPlan#executeTake()`, the algorithm can be | ||
| * summarized in the following steps: | ||
| * 1. If the limit specified in the CollectLimitExec object is 0, the function returns an empty | ||
| * array of batches. | ||
| * 2. Otherwise, execute the child query plan of the CollectLimitExec object to obtain an RDD of | ||
| * data to collect. | ||
| * 3. Use an iterative approach to collect data in batches until the specified limit is reached. | ||
| * In each iteration, it selects a subset of the partitions of the RDD to scan and tries to | ||
| * collect data from them. | ||
| * 4. For each partition subset, we use the runJob method of the Spark context to execute a | ||
| * closure that scans the partition data and converts it to Arrow batches. | ||
| * 5. Check if the collected data reaches the specified limit. If not, it selects another subset | ||
| * of partitions to scan and repeats the process until the limit is reached or all partitions | ||
| * have been scanned. | ||
| * 6. Return an array of all the collected Arrow batches. | ||
| * | ||
| * Note that: | ||
| * 1. The returned Arrow batches row count >= limit, if the input df has more than the `limit` | ||
| * row count | ||
| * 2. We don't implement the `takeFromEnd` logical | ||
| * | ||
| * @return | ||
| */ | ||
| def takeAsArrowBatches( | ||
| collectLimitExec: CollectLimitExec, | ||
| maxRecordsPerBatch: Long, | ||
| maxEstimatedBatchSize: Long, | ||
| timeZoneId: String): Array[Batch] = { | ||
| val n = collectLimitExec.limit | ||
| val schema = collectLimitExec.schema | ||
| if (n == 0) { | ||
| return new Array[Batch](0) | ||
| } else { | ||
| val limitScaleUpFactor = Math.max(conf.limitScaleUpFactor, 2) | ||
| // TODO: refactor and reuse the code from RDD's take() | ||
| val childRDD = collectLimitExec.child.execute() | ||
| val buf = new ArrayBuffer[Batch] | ||
| var bufferedRowSize = 0L | ||
| val totalParts = childRDD.partitions.length | ||
| var partsScanned = 0 | ||
| while (bufferedRowSize < n && partsScanned < totalParts) { | ||
| // The number of partitions to try in this iteration. It is ok for this number to be | ||
| // greater than totalParts because we actually cap it at totalParts in runJob. | ||
| var numPartsToTry = limitInitialNumPartitions | ||
| if (partsScanned > 0) { | ||
| // If we didn't find any rows after the previous iteration, multiply by | ||
| // limitScaleUpFactor and retry. Otherwise, interpolate the number of partitions we need | ||
| // to try, but overestimate it by 50%. We also cap the estimation in the end. | ||
| if (buf.isEmpty) { | ||
| numPartsToTry = partsScanned * limitScaleUpFactor | ||
| } else { | ||
| val left = n - bufferedRowSize | ||
| // As left > 0, numPartsToTry is always >= 1 | ||
| numPartsToTry = Math.ceil(1.5 * left * partsScanned / bufferedRowSize).toInt | ||
| numPartsToTry = Math.min(numPartsToTry, partsScanned * limitScaleUpFactor) | ||
| } | ||
| } | ||
|
|
||
| val partsToScan = | ||
| partsScanned.until(math.min(partsScanned + numPartsToTry, totalParts).toInt) | ||
|
|
||
| val sc = collectLimitExec.session.sparkContext | ||
| val res = sc.runJob( | ||
| childRDD, | ||
| (it: Iterator[InternalRow]) => { | ||
| val batches = ArrowConvertersHelper.toBatchIterator( | ||
| it, | ||
| schema, | ||
| maxRecordsPerBatch, | ||
| maxEstimatedBatchSize, | ||
| n, | ||
| timeZoneId) | ||
| batches.map(b => b -> batches.rowCountInLastBatch).toArray | ||
| }, | ||
| partsToScan) | ||
|
|
||
| var i = 0 | ||
| while (bufferedRowSize < n && i < res.length) { | ||
| var j = 0 | ||
| val batches = res(i) | ||
| while (j < batches.length && n > bufferedRowSize) { | ||
| val batch = batches(j) | ||
| val (_, batchSize) = batch | ||
| buf += batch | ||
| bufferedRowSize += batchSize | ||
| j += 1 | ||
| } | ||
| i += 1 | ||
| } | ||
| partsScanned += partsToScan.size | ||
| } | ||
|
|
||
| buf.toArray | ||
| } | ||
| } | ||
|
|
||
| /** | ||
| * Spark introduced the config `spark.sql.limit.initialNumPartitions` since 3.4.0. see SPARK-40211 | ||
| */ | ||
| def limitInitialNumPartitions: Int = { | ||
| conf.getConfString("spark.sql.limit.initialNumPartitions", "1") | ||
| .toInt | ||
| } | ||
| } |
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,148 @@ | ||
| /* | ||
| * Licensed to the Apache Software Foundation (ASF) under one or more | ||
| * contributor license agreements. See the NOTICE file distributed with | ||
| * this work for additional information regarding copyright ownership. | ||
| * The ASF licenses this file to You under the Apache License, Version 2.0 | ||
| * (the "License"); you may not use this file except in compliance with | ||
| * the License. You may obtain a copy of the License at | ||
| * | ||
| * http://www.apache.org/licenses/LICENSE-2.0 | ||
| * | ||
| * Unless required by applicable law or agreed to in writing, software | ||
| * distributed under the License is distributed on an "AS IS" BASIS, | ||
| * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. | ||
| * See the License for the specific language governing permissions and | ||
| * limitations under the License. | ||
| */ | ||
|
|
||
| package org.apache.spark.sql.execution.arrow | ||
|
|
||
| import java.io.ByteArrayOutputStream | ||
| import java.nio.channels.Channels | ||
|
|
||
| import org.apache.arrow.vector._ | ||
| import org.apache.arrow.vector.ipc.{ArrowStreamWriter, WriteChannel} | ||
| import org.apache.arrow.vector.ipc.message.{IpcOption, MessageSerializer} | ||
| import org.apache.spark.TaskContext | ||
| import org.apache.spark.internal.Logging | ||
| import org.apache.spark.sql.catalyst.InternalRow | ||
| import org.apache.spark.sql.catalyst.expressions.UnsafeRow | ||
| import org.apache.spark.sql.types._ | ||
| import org.apache.spark.sql.util.ArrowUtils | ||
| import org.apache.spark.util.Utils | ||
|
|
||
| object ArrowConvertersHelper extends Logging { | ||
|
|
||
| /** | ||
| * Different from [[org.apache.spark.sql.execution.arrow.ArrowConvertersHelper.toBatchIterator]], | ||
| * each output arrow batch contains this batch row count. | ||
| */ | ||
| def toBatchIterator( | ||
| rowIter: Iterator[InternalRow], | ||
| schema: StructType, | ||
| maxRecordsPerBatch: Long, | ||
| maxEstimatedBatchSize: Long, | ||
| limit: Long, | ||
| timeZoneId: String): ArrowBatchIterator = { | ||
| new ArrowBatchIterator( | ||
| rowIter, | ||
| schema, | ||
| maxRecordsPerBatch, | ||
| maxEstimatedBatchSize, | ||
| limit, | ||
| timeZoneId, | ||
| TaskContext.get) | ||
| } | ||
|
|
||
| private[sql] class ArrowBatchIterator( | ||
| rowIter: Iterator[InternalRow], | ||
| schema: StructType, | ||
| maxRecordsPerBatch: Long, | ||
| maxEstimatedBatchSize: Long, | ||
| limit: Long, | ||
| timeZoneId: String, | ||
| context: TaskContext) | ||
| extends Iterator[Array[Byte]] { | ||
|
|
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| protected val arrowSchema = ArrowUtils.toArrowSchema(schema, timeZoneId) | ||
| private val allocator = | ||
| ArrowUtils.rootAllocator.newChildAllocator( | ||
| s"to${this.getClass.getSimpleName}", | ||
| 0, | ||
| Long.MaxValue) | ||
|
|
||
| private val root = VectorSchemaRoot.create(arrowSchema, allocator) | ||
| protected val unloader = new VectorUnloader(root) | ||
| protected val arrowWriter = ArrowWriter.create(root) | ||
|
|
||
| Option(context).foreach { | ||
| _.addTaskCompletionListener[Unit] { _ => | ||
| root.close() | ||
| allocator.close() | ||
| } | ||
| } | ||
|
|
||
| override def hasNext: Boolean = (rowIter.hasNext && rowCount < limit) || { | ||
| root.close() | ||
| allocator.close() | ||
| false | ||
| } | ||
|
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| var rowCountInLastBatch: Long = 0 | ||
| var rowCount: Long = 0 | ||
|
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| override def next(): Array[Byte] = { | ||
| val out = new ByteArrayOutputStream() | ||
| val writeChannel = new WriteChannel(Channels.newChannel(out)) | ||
|
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| rowCountInLastBatch = 0 | ||
| var estimatedBatchSize = 0 | ||
| Utils.tryWithSafeFinally { | ||
|
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| // Always write the first row. | ||
| while (rowIter.hasNext && ( | ||
| // For maxBatchSize and maxRecordsPerBatch, respect whatever smaller. | ||
| // If the size in bytes is positive (set properly), always write the first row. | ||
| rowCountInLastBatch == 0 && maxEstimatedBatchSize > 0 || | ||
| // If the size in bytes of rows are 0 or negative, unlimit it. | ||
| estimatedBatchSize <= 0 || | ||
| estimatedBatchSize < maxEstimatedBatchSize || | ||
| // If the size of rows are 0 or negative, unlimit it. | ||
| maxRecordsPerBatch <= 0 || | ||
| rowCountInLastBatch < maxRecordsPerBatch || | ||
| rowCount < limit)) { | ||
| val row = rowIter.next() | ||
| arrowWriter.write(row) | ||
| estimatedBatchSize += (row match { | ||
| case ur: UnsafeRow => ur.getSizeInBytes | ||
| // Trying to estimate the size of the current row, assuming 16 bytes per value. | ||
| case ir: InternalRow => ir.numFields * 16 | ||
|
Contributor
There was a problem hiding this comment. Choose a reason for hiding this commentThe reason will be displayed to describe this comment to others. Learn more. in general, we can infer row size by
Contributor
Author
There was a problem hiding this comment. Choose a reason for hiding this commentThe reason will be displayed to describe this comment to others. Learn more. sorry for the lack of documentation.
Contributor
Author
There was a problem hiding this comment. Choose a reason for hiding this commentThe reason will be displayed to describe this comment to others. Learn more. here is the diff, compare with latest spark master branch https://github.com/apache/spark/blob/3c189abd73afa998e8573cbfdaf0f72445284314/sql/core/src/main/scala/org/apache/spark/sql/execution/arrow/ArrowConverters.scala - private[sql] class ArrowBatchWithSchemaIterator(
+ private[sql] class ArrowBatchIterator(
rowIter: Iterator[InternalRow],
schema: StructType,
maxRecordsPerBatch: Long,
maxEstimatedBatchSize: Long,
+ limit: Long,
timeZoneId: String,
context: TaskContext)
- extends ArrowBatchIterator(
- rowIter, schema, maxRecordsPerBatch, timeZoneId, context) {
+ extends Iterator[Array[Byte]] {
+
- private val arrowSchemaSize = SizeEstimator.estimate(arrowSchema)
var rowCountInLastBatch: Long = 0
+ var rowCount: Long = 0
override def next(): Array[Byte] = {
val out = new ByteArrayOutputStream()
val writeChannel = new WriteChannel(Channels.newChannel(out))
rowCountInLastBatch = 0
- var estimatedBatchSize = arrowSchemaSize
+ var estimatedBatchSize = 0
Utils.tryWithSafeFinally {
- // Always write the schema.
- MessageSerializer.serialize(writeChannel, arrowSchema)
// Always write the first row.
while (rowIter.hasNext && (
@@ -31,15 +30,17 @@
estimatedBatchSize < maxEstimatedBatchSize ||
// If the size of rows are 0 or negative, unlimit it.
maxRecordsPerBatch <= 0 ||
- rowCountInLastBatch < maxRecordsPerBatch)) {
+ rowCountInLastBatch < maxRecordsPerBatch ||
+ rowCount < limit)) {
val row = rowIter.next()
arrowWriter.write(row)
estimatedBatchSize += (row match {
case ur: UnsafeRow => ur.getSizeInBytes
- // Trying to estimate the size of the current row, assuming 16 bytes per value.
- case ir: InternalRow => ir.numFields * 16
+ // Trying to estimate the size of the current row
+ case _: InternalRow => schema.defaultSize
})
rowCountInLastBatch += 1
+ rowCount += 1
}
arrowWriter.finish()
val batch = unloader.getRecordBatch() |
||
| }) | ||
| rowCountInLastBatch += 1 | ||
| rowCount += 1 | ||
| } | ||
| arrowWriter.finish() | ||
| val batch = unloader.getRecordBatch() | ||
| MessageSerializer.serialize(writeChannel, batch) | ||
|
|
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| // Always write the Ipc options at the end. | ||
| ArrowStreamWriter.writeEndOfStream(writeChannel, IpcOption.DEFAULT) | ||
|
|
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| batch.close() | ||
| } { | ||
| arrowWriter.reset() | ||
| } | ||
|
|
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| out.toByteArray | ||
| } | ||
| } | ||
|
|
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| // for testing | ||
| def fromBatchIterator( | ||
| arrowBatchIter: Iterator[Array[Byte]], | ||
| schema: StructType, | ||
| timeZoneId: String, | ||
| context: TaskContext): Iterator[InternalRow] = { | ||
| ArrowConverters.fromBatchIterator(arrowBatchIter, schema, timeZoneId, context) | ||
| } | ||
| } | ||
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