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Add "Extended Clickbench" benchmark for median and approx_median for high cardinality aggregates #12438

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merged 7 commits into from
Sep 16, 2024

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@alamb alamb commented Sep 11, 2024

Which issue does this PR close?

Part of #11819

Rationale for this change

As part of reviewing #11827 from @Rachelint I realized there is no benchmark coverage for the code being optimized. Thus we should implement such a benchmark.

What changes are included in this PR?

  1. Add a new benchmark for median and approx_median for high cardinality aggregates in the "extended clickbench" queries

Are these changes tested?

Are there any user-facing changes?

@@ -2,3 +2,4 @@ SELECT COUNT(DISTINCT "SearchPhrase"), COUNT(DISTINCT "MobilePhone"), COUNT(DIST
SELECT COUNT(DISTINCT "HitColor"), COUNT(DISTINCT "BrowserCountry"), COUNT(DISTINCT "BrowserLanguage") FROM hits;
SELECT "BrowserCountry", COUNT(DISTINCT "SocialNetwork"), COUNT(DISTINCT "HitColor"), COUNT(DISTINCT "BrowserLanguage"), COUNT(DISTINCT "SocialAction") FROM hits GROUP BY 1 ORDER BY 2 DESC LIMIT 10;
SELECT "SocialSourceNetworkID", "RegionID", COUNT(*), AVG("Age"), AVG("ParamPrice"), STDDEV("ParamPrice") as s, VAR("ParamPrice") FROM hits GROUP BY "SocialSourceNetworkID", "RegionID" HAVING s IS NOT NULL ORDER BY s DESC LIMIT 10;
SELECT MIN("ResponseStartTiming") tmin, MEDIAN("ResponseStartTiming") tmed, approx_percentile_cont("ResponseStartTiming", 0.95) tp95, approx_percentile_cont("ResponseStartTiming", 0.95) tp99, MAX("ResponseStartTiming") tmax, "UserID" FROM hits GROUP BY "UserID" HAVING tmin > 0 AND tmed > 0 ORDER BY tp95 DESC LIMIT 10;
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Since by default partial aggregation is skipped in case unique groups / input records > 0.8, this grouping cardinality is likely not high enough. Maybe it's worth using "WatchID", "ClientIP" from q32 here, as it for sure benefited from skipping partial aggregation?

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@Rachelint Rachelint Sep 12, 2024

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I think q32 may be the typical high cardinality query too, I am modifying the query and checking.

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I ran EXPLAIN ANALYZE on this branch and I believe you are correct that the partial aggregation skipping is not happening

Specifically skipped_aggregation_rows=0 in the partial aggregate:

AggregateExec: mode=Partial, gby=[UserID@0 as UserID], aggr=[min(hits.parquet.ResponseStartTiming), median(hits.parquet.ResponseStartTiming), approx_percentile_cont(hits.parquet.ResponseStartTiming,Float64(0.95)), max(hits.parquet.ResponseStartTiming)], metrics=[output_rows=21164213, elapsed_compute=142.856836062s, skipped_aggregation_rows=0]

> EXPLAIN ANALYZE SELECT MIN("ResponseStartTiming") tmin, MEDIAN("ResponseStartTiming") tmed, approx_percentile_cont("ResponseStartTiming", 0.95) tp95, approx_percentile_cont("ResponseStartTiming", 0.95) tp99, MAX("ResponseStartTiming") tmax,  "UserID" FROM 'hits.parquet' GROUP BY "UserID" HAVING tmin > 0 AND tmed > 0 ORDER BY tp95 DESC LIMIT 10;
+-------------------+-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+
| plan_type         | plan                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            |
+-------------------+-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+
| Plan with Metrics | SortPreservingMergeExec: [tp95@2 DESC], fetch=10, metrics=[output_rows=10, elapsed_compute=2.666µs]                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             |
|                   |   SortExec: TopK(fetch=10), expr=[tp95@2 DESC], preserve_partitioning=[true], metrics=[output_rows=160, elapsed_compute=54.827251ms, row_replacements=1255]                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     |
|                   |     ProjectionExec: expr=[min(hits.parquet.ResponseStartTiming)@1 as tmin, median(hits.parquet.ResponseStartTiming)@2 as tmed, approx_percentile_cont(hits.parquet.ResponseStartTiming,Float64(0.95))@3 as tp95, approx_percentile_cont(hits.parquet.ResponseStartTiming,Float64(0.95))@3 as tp99, max(hits.parquet.ResponseStartTiming)@4 as tmax, UserID@0 as UserID], metrics=[output_rows=1994511, elapsed_compute=82.127µs]                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                |
|                   |       CoalesceBatchesExec: target_batch_size=8192, metrics=[output_rows=1994511, elapsed_compute=250.672µs]                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     |
|                   |         FilterExec: min(hits.parquet.ResponseStartTiming)@1 > 0 AND median(hits.parquet.ResponseStartTiming)@2 > 0, metrics=[output_rows=1994511, elapsed_compute=37.563416ms]                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  |
|                   |           AggregateExec: mode=FinalPartitioned, gby=[UserID@0 as UserID], aggr=[min(hits.parquet.ResponseStartTiming), median(hits.parquet.ResponseStartTiming), approx_percentile_cont(hits.parquet.ResponseStartTiming,Float64(0.95)), max(hits.parquet.ResponseStartTiming)], metrics=[output_rows=17630976, elapsed_compute=45.058854603s]                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  |
|                   |             CoalesceBatchesExec: target_batch_size=8192, metrics=[output_rows=21164213, elapsed_compute=135.756351ms]                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           |
|                   |               RepartitionExec: partitioning=Hash([UserID@0], 16), input_partitions=16, metrics=[send_time=8.034269627s, repartition_time=2.160110804s, fetch_time=144.660128063s]                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               |
|                   |                 AggregateExec: mode=Partial, gby=[UserID@0 as UserID], aggr=[min(hits.parquet.ResponseStartTiming), median(hits.parquet.ResponseStartTiming), approx_percentile_cont(hits.parquet.ResponseStartTiming,Float64(0.95)), max(hits.parquet.ResponseStartTiming)], metrics=[output_rows=21164213, elapsed_compute=142.856836062s, skipped_aggregation_rows=0]                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        |
|                   |                   ParquetExec: file_groups={16 groups: [[Users/andrewlamb/Downloads/hits.parquet:0..923748528], [Users/andrewlamb/Downloads/hits.parquet:923748528..1847497056], [Users/andrewlamb/Downloads/hits.parquet:1847497056..2771245584], [Users/andrewlamb/Downloads/hits.parquet:2771245584..3694994112], [Users/andrewlamb/Downloads/hits.parquet:3694994112..4618742640], ...]}, projection=[UserID, ResponseStartTiming], metrics=[output_rows=99997497, elapsed_compute=16ns, bytes_scanned=334711589, file_scan_errors=0, row_groups_pruned_bloom_filter=0, row_groups_matched_statistics=0, page_index_rows_filtered=0, row_groups_pruned_statistics=0, pushdown_rows_filtered=0, num_predicate_creation_errors=0, predicate_evaluation_errors=0, file_open_errors=0, row_groups_matched_bloom_filter=0, pushdown_eval_time=32ns, time_elapsed_opening=308.845002ms, time_elapsed_processing=1.314136113s, time_elapsed_scanning_total=82.246142751s, page_index_eval_time=32ns, time_elapsed_scanning_until_data=25.709795ms] |
|                   |                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 |
+-------------------+-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+
1 row(s) fetched.
Elapsed 14.296 seconds.

main:

> EXPLAIN ANALYZE SELECT MIN("ResponseStartTiming") tmin, MEDIAN("ResponseStartTiming") tmed, approx_percentile_cont("ResponseStartTiming", 0.95) tp95, approx_percentile_cont("ResponseStartTiming", 0.95) tp99, MAX("ResponseStartTiming") tmax,  "UserID" FROM 'hits.parquet' GROUP BY "UserID" HAVING tmin > 0 AND tmed > 0 ORDER BY tp95 DESC LIMIT 10;
+-------------------+-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+
| plan_type         | plan                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          |
+-------------------+-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+
| Plan with Metrics | SortPreservingMergeExec: [tp95@2 DESC], fetch=10, metrics=[output_rows=10, elapsed_compute=6.583µs]                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           |
|                   |   SortExec: TopK(fetch=10), expr=[tp95@2 DESC], preserve_partitioning=[true], metrics=[output_rows=160, elapsed_compute=44.490069ms, row_replacements=1259]                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   |
|                   |     ProjectionExec: expr=[min(hits.parquet.ResponseStartTiming)@1 as tmin, median(hits.parquet.ResponseStartTiming)@2 as tmed, approx_percentile_cont(hits.parquet.ResponseStartTiming,Float64(0.95))@3 as tp95, approx_percentile_cont(hits.parquet.ResponseStartTiming,Float64(0.95))@3 as tp99, max(hits.parquet.ResponseStartTiming)@4 as tmax, UserID@0 as UserID], metrics=[output_rows=1994511, elapsed_compute=80.704µs]                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              |
|                   |       CoalesceBatchesExec: target_batch_size=8192, metrics=[output_rows=1994511, elapsed_compute=266.832µs]                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   |
|                   |         FilterExec: min(hits.parquet.ResponseStartTiming)@1 > 0 AND median(hits.parquet.ResponseStartTiming)@2 > 0, metrics=[output_rows=1994511, elapsed_compute=50.816018ms]                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                |
|                   |           AggregateExec: mode=FinalPartitioned, gby=[UserID@0 as UserID], aggr=[min(hits.parquet.ResponseStartTiming), median(hits.parquet.ResponseStartTiming), approx_percentile_cont(hits.parquet.ResponseStartTiming,Float64(0.95)), max(hits.parquet.ResponseStartTiming)], metrics=[output_rows=17630976, elapsed_compute=43.153463868s]                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                |
|                   |             CoalesceBatchesExec: target_batch_size=8192, metrics=[output_rows=21164213, elapsed_compute=86.665877ms]                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          |
|                   |               RepartitionExec: partitioning=Hash([UserID@0], 16), input_partitions=16, metrics=[repartition_time=2.097894133s, fetch_time=141.020531259s, send_time=8.982681573s]                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             |
|                   |                 AggregateExec: mode=Partial, gby=[UserID@0 as UserID], aggr=[min(hits.parquet.ResponseStartTiming), median(hits.parquet.ResponseStartTiming), approx_percentile_cont(hits.parquet.ResponseStartTiming,Float64(0.95)), max(hits.parquet.ResponseStartTiming)], metrics=[output_rows=21164213, elapsed_compute=139.1215463s]                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    |
|                   |                   ParquetExec: file_groups={16 groups: [[Users/andrewlamb/Downloads/hits.parquet:0..923748528], [Users/andrewlamb/Downloads/hits.parquet:923748528..1847497056], [Users/andrewlamb/Downloads/hits.parquet:1847497056..2771245584], [Users/andrewlamb/Downloads/hits.parquet:2771245584..3694994112], [Users/andrewlamb/Downloads/hits.parquet:3694994112..4618742640], ...]}, projection=[UserID, ResponseStartTiming], metrics=[output_rows=99997497, elapsed_compute=16ns, predicate_evaluation_errors=0, file_open_errors=0, row_groups_pruned_bloom_filter=0, row_groups_pruned_statistics=0, bytes_scanned=334711589, page_index_rows_filtered=0, num_predicate_creation_errors=0, file_scan_errors=0, row_groups_matched_bloom_filter=0, row_groups_matched_statistics=0, pushdown_rows_filtered=0, time_elapsed_opening=285.717582ms, time_elapsed_scanning_until_data=64.90646ms, time_elapsed_scanning_total=80.855628351s, time_elapsed_processing=1.21575998s, page_index_eval_time=32ns, pushdown_eval_time=32ns] |
|                   |                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               |
+-------------------+-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+

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When I changed it to GROUP BY "UserID","WatchID", "ClientIP" I see the skipped aggregation rows now:

skipped_aggregation_rows=98293561

AggregateExec: mode=Partial, gby=[UserID@2 as UserID, WatchID@0 as WatchID, ClientIP@1 as ClientIP], aggr=[min(hits.parquet.ResponseStartTiming), median(hits.parquet.ResponseStartTiming), approx_percentile_cont(hits.parquet.ResponseStartTiming,Float64(0.95)), max(hits.parquet.ResponseStartTiming)], metrics=[output_rows=99997497, elapsed_compute=246.594546516s, skipped_aggregation_rows=98293561]

> EXPLAIN ANALYZE SELECT MIN("ResponseStartTiming") tmin, MEDIAN("ResponseStartTiming") tmed, approx_percentile_cont("ResponseStartTiming", 0.95) tp95, approx_percentile_cont("ResponseStartTiming", 0.95) tp99, MAX("ResponseStartTiming") tmax,  "UserID", "WatchID", "ClientIP" FROM 'hits.parquet' GROUP BY "UserID","WatchID", "ClientIP" HAVING tmin > 0 AND tmed > 0 ORDER BY tp95 DESC LIMIT 10;

And with that change now the query doesn't finish on my laptop (I killed it after using 100GB of memory) but with #11827 it finishes in 45 seconds.

I will think about how to modify this query to reflect the benefit without making it impossibly to run on low resource machines

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@Rachelint Rachelint Sep 12, 2024

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After creating a q32 like query, seems obvious improvement in my local
(I run it with just a subset of hits_partitioned to avoid situation that the quey can't finish).
#11827 (comment)

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After creating a q32 like query, seems obvious improvement in my local

Yes, I agree that #11827 provides an improvement. I just posted a comment #11827 (comment)

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LGTM, thank you @alamb

@alamb alamb merged commit 416ff2d into apache:main Sep 16, 2024
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alamb commented Sep 16, 2024

Thank you for the review @korowa

@alamb alamb deleted the alamb/test_mediate_perf branch September 16, 2024 17:56
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