Re-enable checker for files excluded to due bug (now fixed) #29932
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Some bugs that we discovered and reported to checkerframework have been fixed. This re-enables checkerframework for those files.
To create this pull request, I re-enabled checker for all files, and then re-disabled it for a few files that still have issues. So the new status is fully up to date (for the version of checker we are using)
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addresses #123
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