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The data portal supporting the submission, exploration, and management of projects and datasets to cellxgene.
Python pipeline and Javascript scatter plot library for single-cell datasets, http://cellbrowser.rtfd.org
The detection of peaks and valleys in a 1d-vector or 2d-array (image)
Open-Source Four-Parameter Logistic Curve Fit For ELISA
scripts and notebooks from sanbomics
A scalable sparse neural network framework for rare cell type annotation of single-cell transcriptome data
2023 Scipy Pandas tutorial
A set of tools for knitters to create charts and eventually more.
KnitPy is a free knitting chart making tool, written in Python
Efficient Python Tricks and Tools for Data Scientists
Parse strings using a specification based on the Python format() syntax.
Single-cell multi-omics integration using Optimal Transport
A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.
A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.
Python for Data Science. This repository hosts the code behind the online book that teaches you how to use Python for data science.
dpeerlab / PhenoGraph
Forked from jacoblevine/PhenoGraphSubpopulation detection in high-dimensional single-cell data
Chat with your database or your datalake (SQL, CSV, parquet). PandasAI makes data analysis conversational using LLMs and RAG.
Statistical package in Python based on Pandas
Bioinformatics data analysis and visualization toolkit
SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data
Genomic interval operations on Pandas DataFrames
Python package to perform enrichment analysis from omics data.
Batch alignment of single-cell transcriptomics data using deep metric learning
HDF5 for Python -- The h5py package is a Pythonic interface to the HDF5 binary data format.
multiprocessing enabled out-of-memory data analysis library for tabular data.