Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Fixed the behavior of minimizers in Poly-A/C/T/G regions #10

Merged
merged 4 commits into from
Sep 8, 2023

Conversation

aljpetri
Copy link
Owner

@aljpetri aljpetri commented Sep 8, 2023

The Minimizer detection is now more optimized allowing the algorithm to cope with polyA/C/T/G-regions better than previously.
Additionally if we find a minimizer_combination to be too abundant we remove it from the list of combinations used for the graph generation as those regions do not help to relate the reads any better.

@aljpetri aljpetri merged commit 5d35642 into master Sep 8, 2023
1 check passed
@aljpetri aljpetri deleted the MinimizerFix branch September 11, 2023 08:27
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

1 participant