Fixes docker and all-in-one cmake build

CMakeLists.txt

@@ -19,6 +19,8 @@ option(AV_BUILD_ALICEVISION "Enable building of AliceVision" ON)
 
 option(AV_USE_CUDA "Enable CUDA" ON)
 
+option(BUILD_SHARED_LIBS "Build shared libraries" ON)
+
 if(NOT CMAKE_BUILD_TYPE)
   set(CMAKE_BUILD_TYPE Release CACHE STRING "Build type for AliceVision" FORCE)
 endif()
@@ -178,6 +180,7 @@ set(TBB_CMAKE_FLAGS -DTBB_INCLUDE_DIRS:PATH=${CMAKE_INSTALL_PREFIX}/include -DTB
 
 # Add Eigen
 set(EIGEN_TARGET eigen)
+set(EIGEN_DISABLE_ALIGN_FLAGS -DEIGEN_MAX_ALIGN_BYTES=0 -DEIGEN_MAX_STATIC_ALIGN_BYTES=0)
 ExternalProject_Add(${EIGEN_TARGET}
        URL https://github.com/eigenteam/eigen-git-mirror/archive/3.3.7.tar.gz
        PREFIX ${BUILD_DIR}
@@ -187,9 +190,9 @@ ExternalProject_Add(${EIGEN_TARGET}
        SOURCE_DIR ${CMAKE_CURRENT_BINARY_DIR}/eigen
        BINARY_DIR ${BUILD_DIR}/eigen_build
        INSTALL_DIR ${CMAKE_INSTALL_PREFIX}
-       CONFIGURE_COMMAND ${CMAKE_COMMAND} ${CMAKE_CORE_BUILD_FLAGS} -DCMAKE_INSTALL_PREFIX:PATH=<INSTALL_DIR> <SOURCE_DIR>
+       CONFIGURE_COMMAND ${CMAKE_COMMAND} ${CMAKE_CORE_BUILD_FLAGS} ${EIGEN_DISABLE_ALIGN_FLAGS} -DCMAKE_INSTALL_PREFIX:PATH=<INSTALL_DIR> <SOURCE_DIR>
        )
-set(EIGEN_CMAKE_FLAGS -DEigen3_DIR:PATH=${CMAKE_INSTALL_PREFIX}/share/eigen3/cmake -DEIGEN3_INCLUDE_DIR=${CMAKE_INSTALL_PREFIX}/include/eigen3 -DEIGEN_INCLUDE_DIR=${CMAKE_INSTALL_PREFIX}/include/eigen3 -DEigen_INCLUDE_DIR=${CMAKE_INSTALL_PREFIX}/include/eigen3)
+set(EIGEN_CMAKE_FLAGS ${EIGEN_DISABLE_ALIGN_FLAGS} -DEigen3_DIR:PATH=${CMAKE_INSTALL_PREFIX}/share/eigen3/cmake -DEIGEN3_INCLUDE_DIR=${CMAKE_INSTALL_PREFIX}/include/eigen3 -DEIGEN_INCLUDE_DIR=${CMAKE_INSTALL_PREFIX}/include/eigen3 -DEigen_INCLUDE_DIR=${CMAKE_INSTALL_PREFIX}/include/eigen3)
 
 if(AV_BUILD_OPENGV)
 set(OPENGV_TARGET opengv)
@@ -234,7 +237,7 @@ set(SUITESPARSE_TARGET suitesparse)
 set(SUITESPARSE_INTERNAL_MAKE_CMD LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${CMAKE_INSTALL_PREFIX}/${CMAKE_INSTALL_LIBDIR} make BLAS="${BLAS_LIBRARIES}" LAPACK="${LAPACK_LIBRARIES}")
 ExternalProject_Add(${SUITESPARSE_TARGET}
        # URL https://github.com/DrTimothyAldenDavis/SuiteSparse/archive/v4.5.6.tar.gz
-       URL https://github.com/DrTimothyAldenDavis/SuiteSparse/archive/v5.6.0.tar.gz  # requires gxx >= 4.9, centos 7 use gxx-4.8.5 by default
+       URL https://github.com/DrTimothyAldenDavis/SuiteSparse/archive/v5.7.2.tar.gz  # requires gxx >= 4.9, centos 7 use gxx-4.8.5 by default
        PREFIX ${BUILD_DIR}
        BUILD_IN_SOURCE 0
        BUILD_ALWAYS 0

Dockerfile

@@ -24,14 +24,21 @@ ENV AV_DEV=/opt/AliceVision_git \
 COPY . "${AV_DEV}"
 
 WORKDIR "${AV_BUILD}"
+
 RUN cmake -DCMAKE_BUILD_TYPE=Release -DBUILD_SHARED_LIBS:BOOL=ON -DTARGET_ARCHITECTURE=core \
       -DALICEVISION_BUILD_DEPENDENCIES:BOOL=OFF \
       -DCMAKE_PREFIX_PATH:PATH="${AV_INSTALL}" \
       -DCMAKE_INSTALL_PREFIX:PATH="${AV_INSTALL}" -DALICEVISION_BUNDLE_PREFIX="${AV_BUNDLE}" \
       -DALICEVISION_USE_ALEMBIC=ON -DMINIGLOG=ON -DALICEVISION_USE_CCTAG=ON -DALICEVISION_USE_OPENCV=ON -DALICEVISION_USE_OPENGV=ON \
       -DALICEVISION_USE_POPSIFT=ON -DALICEVISION_USE_CUDA=ON -DALICEVISION_BUILD_DOC=OFF -DALICEVISION_BUILD_EXAMPLES=OFF \
-      "${AV_DEV}"
+      "${AV_DEV}" && \
+\
+make install && \
+\
+make bundle && \
+\
+cd /opt && \
+\
+rm -rf "${AV_BUILD}"
 
-RUN make install && make bundle
-# && cd /opt && rm -rf "${AV_BUILD}"
 

Dockerfile_deps

@@ -17,30 +17,39 @@ LABEL maintainer="AliceVision Team [email protected]"
 # OS/Version (FILE): cat /etc/issue.net
 # Cuda version (ENV): $CUDA_VERSION
 
-ENV AV_DEV=/opt/AliceVisionDeps_git \
-    AV_BUILD=/tmp/AliceVisionDeps_build \
+ENV AV_DEPS_DEV=/opt/AliceVisionDeps_git \
+    AV_DEPS_BUILD=/tmp/AliceVisionDeps_build \
     AV_INSTALL=/opt/AliceVision_install \
     AV_BUNDLE=/opt/AliceVision_bundle \
     PATH="${PATH}:${AV_BUNDLE}" \
-    VERBOSE=1
+    VERBOSE=1 \
+    YUM_INSTALL='yum install -y --setopt=tsflags=nodocs'
 
+#
 # Install all compilation tools
 # - file and openssl are needed for cmake
-RUN yum -y install centos-release-scl
-RUN yum -y install \
-        devtoolset-6 \
-        devtoolset-6-make \
-        devtoolset-6-gcc-gfortran \
-        file \
-        git \
-        wget \
-        unzip \
-        yasm \
-        pkg-config \
-        libtool \
-        nasm \
-        automake \
-        openssl-devel
+#
+# Workaround to give access to deprecated devtoolset-6 is taken from ASWF container:
+# https://github.com/AcademySoftwareFoundation/aswf-docker/blob/master/scripts/common/install_yumpackages.sh#L119
+#
+# Install packages one by one with yum to ensure that it creates an error if a package is missing.
+#
+RUN $YUM_INSTALL centos-release-scl-rh && \
+    $YUM_INSTALL yum-utils && \
+    sed -i 's/7/7.6.1810/g; s|^#\s*\(baseurl=http://\)mirror|\1vault|g; /mirrorlist/d' /etc/yum.repos.d/CentOS-SCLo-*.repo && \
+    yum clean all && \
+    $YUM_INSTALL devtoolset-6-toolchain --nogpgcheck && \
+    $YUM_INSTALL --enablerepo=extras epel-release && \
+    $YUM_INSTALL file && \
+    $YUM_INSTALL git && \
+    $YUM_INSTALL wget && \
+    $YUM_INSTALL unzip && \
+    $YUM_INSTALL yasm && \
+    $YUM_INSTALL pkgconfig && \
+    $YUM_INSTALL libtool && \
+    $YUM_INSTALL nasm && \
+    $YUM_INSTALL automake && \
+    $YUM_INSTALL openssl-devel
 
 # Okay, change our shell to specifically use our software collections.
 # (default was SHELL [ "/bin/sh", "-c" ])
@@ -60,12 +69,27 @@ RUN wget https://cmake.org/files/v3.16/cmake-3.16.3.tar.gz && tar zxvf cmake-3.1
 WORKDIR "${AV_BUNDLE}/share/aliceVision"
 RUN wget https://gitlab.com/alicevision/trainedVocabularyTreeData/raw/master/vlfeat_K80L3.SIFT.tree
 
-COPY . "${AV_DEV}"
+COPY . "${AV_DEPS_DEV}"
+
+WORKDIR "${AV_DEPS_BUILD}"
+# Build and clear build files in one line to reduce image size (avoid intermediate cache)
+RUN \
+\
+cmake "${AV_DEPS_DEV}" -DCMAKE_BUILD_TYPE=Release -DBUILD_SHARED_LIBS:BOOL=ON -DALICEVISION_BUILD_DEPENDENCIES:BOOL=ON -DAV_DEPS_BUILD_ALICEVISION:BOOL=OFF -DCMAKE_INSTALL_PREFIX="${AV_INSTALL}" -DALICEVISION_BUNDLE_PREFIX="${AV_BUNDLE}" && \
+\
+make -j8 && \
+\
+make install && \
+\
+mv ${AV_INSTALL}/bin ${AV_INSTALL}/bin_deps && \
+\
+cd /opt && \
+\
+rm -rf "${AV_DEPS_BUILD}"
 
-WORKDIR "${AV_BUILD}"
-RUN cmake "${AV_DEV}" -DCMAKE_BUILD_TYPE=Release -DALICEVISION_BUILD_DEPENDENCIES:BOOL=ON -DAV_BUILD_ALICEVISION:BOOL=OFF -DCMAKE_INSTALL_PREFIX="${AV_INSTALL}" -DALICEVISION_BUNDLE_PREFIX="${AV_BUNDLE}"
+## To debug a specific library
 
-WORKDIR "${AV_BUILD}"
+# WORKDIR "${AV_DEPS_BUILD}"
 # RUN make zlib
 # RUN make geogram
 # RUN make tbb
@@ -84,5 +108,3 @@ WORKDIR "${AV_BUILD}"
 # RUN make alembic
 # RUN make popsift
 
-RUN make install && mv ${AV_INSTALL}/bin ${AV_INSTALL}/bin_deps
-# && cd /opt && rm -rf "${AV_BUILD}"

src/CMakeLists.txt

@@ -345,7 +345,7 @@ find_package(Eigen3 3.3 REQUIRED)
 if(Eigen3_FOUND OR EIGEN3_FOUND)
   message(STATUS "EIGEN_INCLUDE_DIR: ${EIGEN_INCLUDE_DIR}")
   # See https://eigen.tuxfamily.org/dox/group__TopicUnalignedArrayAssert.html
-  set(AV_EIGEN_DEFINITIONS EIGEN_DONT_ALIGN_STATICALLY EIGEN_DONT_VECTORIZE)
+  set(AV_EIGEN_DEFINITIONS -DEIGEN_MAX_ALIGN_BYTES=0 -DEIGEN_MAX_STATIC_ALIGN_BYTES=0)
 else()
   message(FATAL_ERROR " EIGEN NOT FOUND. EIGEN_INCLUDE_DIR: ${EIGEN_INCLUDE_DIR}")
 endif()