BubbleFinder

To build:

mkdir build
cd build
cmake .. 
make 

To run BubbleFinder:

cd build 
./BubbleFinder -g {graphPath} [--gfa] -o {-, outputPath} [--superbubbles | --snarls] -j {threadsNumber} -m {stack size per thread in bytes}

To run brute-force tester for snarls

cd build 
./snarls_bf graphPath