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Add Examples gallery documenting AI4Curation implementations #55

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9abc05d
Add Examples gallery page documenting AI4Curation implementations
Nov 18, 2025
653f508
Streamline examples page per issue #47 feedback
Nov 22, 2025
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55 changes: 55 additions & 0 deletions docs/examples.md
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# Example Repositories Using AI4Curation Setup

## Ontology Repositories

### Mondo Disease Ontology
**Repository**: [monarch-initiative/mondo](https://github.com/monarch-initiative/mondo)

**Key Files to Explore**:
- [ai-agent.yml](https://github.com/monarch-initiative/mondo/blob/master/.github/workflows/ai-agent.yml) - GitHub Actions workflow configuration
- [CLAUDE.md](https://github.com/monarch-initiative/mondo/blob/master/CLAUDE.md) - Agent instructions
- [.config/goose/config.yaml](https://github.com/monarch-initiative/mondo/tree/master/.config/goose) - Goose configuration

**Agent Platform**: Goose (via dragon-ai-agent)

**Agent Activity**: [Search for @dragon-ai-agent mentions and PRs](https://github.com/monarch-initiative/mondo/issues?q=involves%3Adragon-ai-agent)

### Cell Ontology (CL)
**Repository**: [obophenotype/cell-ontology](https://github.com/obophenotype/cell-ontology)

**Key Files to Explore**:
- CLAUDE.md - Agent instructions

**Agent Platform**: Goose (via dragon-ai-agent)

**Agent Activity**: [Search for @dragon-ai-agent mentions and PRs](https://github.com/obophenotype/cell-ontology/issues?q=involves%3Adragon-ai-agent)

### Uberon Anatomy Ontology
**Repository**: [obophenotype/uberon](https://github.com/obophenotype/uberon)

**Key Files to Explore**:
- [PR #3580](https://github.com/obophenotype/uberon/pull/3580) - GitHub Copilot integration

**Agent Platform**: GitHub Copilot, Goose

**Agent Activity**: [Search for @dragon-ai-agent mentions and PRs](https://github.com/obophenotype/uberon/issues?q=involves%3Adragon-ai-agent)

### EFO (Experimental Factor Ontology)
**Repository**: [EBISPOT/efo](https://github.com/EBISPOT/efo)

**Agent Platform**: GitHub Copilot

**Agent Activity**: [Search for Copilot activity](https://github.com/EBISPOT/efo/issues?q=author%3Aapp%2Fcopilot)

## Documentation Repositories

### AI4Curators Documentation
**Repository**: [ai4curation/aidocs](https://github.com/ai4curation/aidocs) (this repository)

**Key Files to Explore**:
- `.github/workflows/` - GitHub Actions for AI agent integration
- `CLAUDE.md` - Repository-specific instructions

**Agent Platform**: Claude Code, Goose

**Agent Activity**: [Search for @dragon-ai-agent mentions and PRs](https://github.com/ai4curation/aidocs/issues?q=involves%3Adragon-ai-agent)
1 change: 1 addition & 0 deletions mkdocs.yml
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Expand Up @@ -37,6 +37,7 @@ plugins:
nav:
- Home: index.md
- FAQ: faq.md
- Examples: examples.md
- Curator how-tos:
- Instruct the GitHub agent: how-tos/instruct-github-agent.md
- Make identifiers hallucination-resistant: how-tos/make-ids-hallucination-resistant.md
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