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Achievement: Starstruckx2Achievement: Arctic Code Vault ContributorAchievement: Pull Sharkx3

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Achievement: Starstruckx2Achievement: Arctic Code Vault ContributorAchievement: Pull Sharkx3

Organizations

@nanoporetech @birneylab

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a-slide/README.md

Hi there 👋

I am Adrien

I am a Senior research scientist working in the research division at Oxford Nanopore

I ❤️ Python, linux and dataviz

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Adrien's github stats

Projects

pycoQC pycoMeth pycoSnake
NanoCount Nanocompore

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  1. Sekator Public archive

    Multithreaded quality and adapter trimmer for PAIRED fastq files (Python2.7/Cython/C)

    Python 3 2

  2. pycoSnake Public archive

    pycoSnake is a neatly wrapped collection of snakemake workflows for analysing nanopore and Illumina sequencing data

    Python 8 1

  3. pycoMeth Public archive

    DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets

    Python 34 2

  4. versipy Public

    Versatile version and medatada managment across the python packaging ecosystem with git integration

    Python 1 1

  5. pycoQC Public archive

    pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies basecaller (Albacore/Guppy)

    Python 276 40

  6. NanoCount Public

    EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2

    Python 59 5

4 contributions in the last year

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Activity overview

Contributed to a-slide/NanoCount, a-slide/pycoQC
Loading A graph representing a-slide's contributions from April 14, 2024 to April 15, 2025. The contributions are 100% commits, 0% issues, 0% pull requests, 0% code review.   Code review   Issues   Pull requests 100% Commits

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April 2025

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