The VCF file includes the genotypes of the two parental rice cultivars Hitomebore and Moukoto and their 249 recombinant inbred lines (RILs). This VCF file was generated based on the Os-Nipponbare-Reference-IRGSP-1.0 reference genome published in Kawahara et al. (2013). The sample ID prefix "N19_" in the VCF can be repalced to "RIL #" (e.g. N19_058 -> RIL #58).
- Pik-1 nucleotide sequences (FASTA) aligned with MAFFT
- Pik-2 nucleotide sequences (FASTA) aligned with MAFFT
- Pik-1 tree recontructed with IQ-TREE
- Pik-2 tree recontructed with IQ-TREE
- Gene expression of O23 at 24 hours after barley infection (GTF)
- Gene expression of O23 at 48 hours after barley infection (GTF)
- Gene expression of TH3o at 24 hours after barley infection (GTF)
- Gene expression of TH3o at 48 hours after barley infection (GTF)
- Sequences of TEs (FASTA) curated in Chuma et al. (2011)
- Annotation of TEs of O23 genome (GFF)
- Sequences of LTRs of retrotransposons (FASTA) curated in Chuma et al. (2011)
- Annotation of LTRs of O23 genome (GFF)
The CSV file includes the genotypes of the 144 F1 progeny derived from a cross between the M. oryzae isolates TH3o and O23. The genotypes were generated based on the O23 reference genome. The genotypes "0" or "1" in the file represent the genotypes derived from O23 or TH3o, respectively.