A Julia script for stochastic simulation of cell cycle oscillations in 0D and 1D. This supplements and cross-checks the simulation by the main repository of our research.

To run the Gillespie's SSA to generate realizations of Cdk1 dynamics time series, use cell_cycle_2ode from src/gillespie.jl. The following example generates stochastic trajectories shown in Fig. S6.

cd mitotic-waves-stochastic
mkdir data
julia --project=. scripts/ssa.jl

The implemented cell cycle dynamics follows the model by Yang el al. (2013).

Mitotic waves can be simulated using cell_cycle_2ode from src/waves.jl. Refer to the following script file.

julia --project=. scripts/langevin.jl