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1. phenotypic_profiling phenotypic_profiling Public

   Machine learning for predicting 15 single-cell phenotypes from cell morphology profiles

   Jupyter Notebook 1 3

2. CytoSnake CytoSnake Public

   Orchestrating high-dimensional cell morphology data processing pipelines

   Python 3 3

3. nf1_cellpainting_data nf1_cellpainting_data Public

   This repository contains all the modules to perform image-based analysis with CellProfiler on NF1 Schwann cell data.

   Jupyter Notebook 4 5

4. IDR_stream IDR_stream Public

   Software for feature extraction from IDR image data

   Jupyter Notebook 4 2

5. JUMP-single-cell JUMP-single-cell Public

   Single cell analysis of the JUMP Cell Painting consortium pilot data (cpg0000)

   Jupyter Notebook 3 4

6. pyroptosis_signature_image_profiling pyroptosis_signature_image_profiling Public

   This repository contains the pipelines used to analyze the data sets from the Interstellar collaboration.

   Jupyter Notebook 2 3