This repository is an Example using GitHub Actions [egge] for the Advanced Programming with R class. The project consists of a quarto document updated once a week or whenever there’s a push or pull request. It performs a search on PubMed looking for the latest papers about Agent-Based Models. The last update was on 2024-10-06 00:50:54.
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A novel format of TNF-alpha binding affibody molecule ameliorate coronary artery endothelial injury in a mouse model of Kawasaki disease.
Zhu J, Yu H, Xie L, Shuai D, Huang Z, Chen Y, Ni C, Jia C, Rong X, Zhang L, Chu M.
Int J Biol Macromol. 2024 Oct 2:136255. doi: 10.1016/j.ijbiomac.2024.136255. Online ahead of print.
Herein, we examine the potential therapeutic capabilities of a novel type of TNFalpha-targeting agent based on an affibody molecule possessing fundamentally different properties than mAbs. …
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Cost-effectiveness of SARS-CoV-2 self-testing at routine gatherings to minimize community-level infections in lower-middle income countries: A mathematical modeling study.
Hansen MA, Han AX, Chevalier JM, Klock E, Pandithakoralage H, Nooy A, Ockhuisen T, Girdwood SJ, Lekodeba NA, Khan S, Jenkins HE, Johnson CC, Sacks JA, Russell CA, Nichols BE.
PLoS One. 2024 Oct 4;19(10):e0311198. doi: 10.1371/journal.pone.0311198. eCollection 2024.
Over the past four years, self-testing strategies have been an impactful tool for countries’ response to the COVID-19 pandemic, especially early on to mitigate the spread when vaccination and treatment options were limited. We used an agent-based mathematical mod …
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Quantifying age-specific household contacts in Aotearoa New Zealand for infectious disease modelling.
Sullivan C, Senanayake P, Plank MJ.
R Soc Open Sci. 2024 Oct 2;11(10):240550. doi: 10.1098/rsos.240550. eCollection 2024 Oct.
Here we use a comprehensive household composition dataset based on Aotearoa New Zealand census and administrative data to construct a household contact matrix and a synthetic population that can be used for modelling. We investigate the behaviour of a compartment-based and …
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Probability of early infection extinction depends linearly on the virus clearance rate.
Juhász N, Bartha FA, Marzban S, Han R, Röst G.
R Soc Open Sci. 2024 Oct 2;11(10):240903. doi: 10.1098/rsos.240903. eCollection 2024 Oct.
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Metabolic interactions shape emergent biofilm structures in a conceptual model of gut mucosal bacterial communities.
Valiei A, Dickson A, Aminian-Dehkordi J, Mofrad MRK.
NPJ Biofilms Microbiomes. 2024 Oct 2;10(1):99. doi: 10.1038/s41522-024-00572-y.
The gut microbiome plays a major role in human health; however, little is known about the structural arrangement of microbes and factors governing their distribution. In this work, we present an in silico agent-based model (ABM) to conceptually simulate the d …
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On the move: Influence of animal movements on count error during drone surveys.
Schultz EA, Ellison-Neary N, Boudreau MR, Street GM, Jones LR, Evans KO, Iglay RB.
Ecol Evol. 2024 Sep 29;14(10):e70287. doi: 10.1002/ece3.70287. eCollection 2024 Oct.
However, drone-based surveys may also introduce counting errors, especially when monitoring mobile animals. Using an agent-based model simulation approach, we evaluated the error associated with counting a single animal across various drone flight patterns un …
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Exploring Trade-Offs for Online Mental Health Matching: Agent-Based Modeling Study.
Liu Y, Fang A, Moriarty G, Firman C, Kraut RE, Zhu H.
JMIR Form Res. 2024 Oct 1;8:e58241. doi: 10.2196/58241.
OBJECTIVE: In this study, we collaborated with one of the world’s largest OMHCs; our contribution is to show the application of agent-based modeling for the design of online community matching algorithms. We developed an agent-based simulation f …
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SMoRe GloS: An efficient and flexible framework for inferring global sensitivity of agent-based model parameters.
Bergman DR, Jackson T, Jain HV, Norton KA.
bioRxiv [Preprint]. 2024 Sep 22:2024.09.18.613723. doi: 10.1101/2024.09.18.613723.
Agent-based models (ABMs) have become essential tools for simulating complex biological, ecological, and social systems where emergent behaviors arise from the interactions among individual agents. …Remarkably, our method also estimates sensitivities for AB …
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Feature selection integrating Shapley values and mutual information in reinforcement learning: An application in the prediction of post-operative outcomes in patients with end-stage renal disease.
Kim SH, Park SY, Seo H, Woo J.
Comput Methods Programs Biomed. 2024 Sep 21;257:108416. doi: 10.1016/j.cmpb.2024.108416. Online ahead of print.
METHODS: We proposed a multi-agent feature selection model based on a comprehensive reward function that combines classification model performance, Shapley additive explanations values, and the mutual information. …CONCLUSION: This study contributes important rese …
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Integrating social learning and network formation for social tipping towards a sustainable future.
von Flüe L, Vogt S.
Curr Opin Psychol. 2024 Sep 24;60:101915. doi: 10.1016/j.copsyc.2024.101915. Online ahead of print.
Understanding these dynamics is crucial for promoting a cultural shift towards sustainability, yet our grasp of how normative transformations occur remains limited. In this paper, we simulate an agent-based model in which agents choose between maintaining the …
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