Deploy to GitHub Pages: 12d94c7

Installed_Software_Lists/module-packages/index.html

@@ -1638,7 +1638,7 @@ <h1 id="general-software-lists">General Software Lists<a class="headerlink" href
 <p>Our clusters have a wide range of software installed, available by using the modules system.</p>
 <p>The module files are organised by name, version, variant (where applicable) and, if relevant, the compiler version used to build the software. If no compiler version is given, either no compiler was required, or only the base system compiler (<code>/usr/bin/gcc</code>) and libraries were used.</p>
 <p>When we install applications, we try to install them on all of our clusters, but sometimes licence restrictions prevent it. If something seems to be missing, it may be because we are not able to provide it. Please contact us for more information if this is hindering your work.</p>
-<p>The lists below were last updated at 15:35:11 (+0100) on 09 Sep 2024, and are generated from the software installed on the <a href="../../Clusters/Myriad/">Myriad</a> cluster.</p>
+<p>The lists below were last updated at 17:05:16 (+0100) on 09 Sep 2024, and are generated from the software installed on the <a href="../../Clusters/Myriad/">Myriad</a> cluster.</p>
 <h2 id="bundles">Bundles<a class="headerlink" href="#bundles" title="Permanent link">§</a></h2>
 <p>Some applications or tools depend on a lot of other modules, or have some awkward requirements. For these, we sometimes make a "bundle" module in this section, that loads all the dependencies.</p>
 <p>For Python and R in particular, we also have <code>recommended</code> bundles that load the module for a recent version of Python or R, along with a collection of packages for it that have been requested by users, and the modules those packages require.</p>

Installed_Software_Lists/python-packages/index.html

@@ -1460,7 +1460,7 @@ <h1 id="python-packages">Python Packages<a class="headerlink" href="#python-pack
 
 <p>The version of Python 3 provided with this bundle is currently Python 3.9.10.</p>
 <p>Note that some packages we do not provide this way, because they have complicated non-Python dependencies. These are usually provided using the normal application modules system. This includes <strong>TensorFlow</strong>.</p>
-<p>The following list was last updated at 15:35:04 (+0100) on 09 Sep 2024.</p>
+<p>The following list was last updated at 17:05:08 (+0100) on 09 Sep 2024.</p>
 <table>
 <thead>
 <tr>

Installed_Software_Lists/r-packages/index.html

@@ -1459,7 +1459,7 @@ <h1 id="r-packages">R Packages<a class="headerlink" href="#r-packages" title="Pe
 </code></pre></div>
 
 <p>The version of R provided with this bundle is currently R version 4.2.0 (2022-04-22).</p>
-<p>The following list was last updated at: 15:35:07 (+0100) on 09 Sep 2024.</p>
+<p>The following list was last updated at: 17:05:10 (+0100) on 09 Sep 2024.</p>
 <table>
 <thead>
 <tr>

Job_Results/index.html

@@ -1609,7 +1609,7 @@
 
 
 <h1 id="where-do-my-results-go">Where do my results go?<a class="headerlink" href="#where-do-my-results-go" title="Permanent link">§</a></h1>
-<p>After submitting your job, you can use the command <code>qstat</code> to view the status of all the jobs you have submitted. Once you can no longer see your job on the list, this means your job has completed. To view details on jobs that have completed, you can run <code>jobhist</code>. There are various ways of monitoring the output of your job.</p>
+<p>After submitting your job, you can use the command <code>qstat</code> to view the status of all the jobs you have submitted. Once you can no longer see your job on the list, this means your job has completed. To view details on jobs that have completed, you can run <code>jobhist</code>, part of the <a href="../Installed_Software_Lists/module-packages/"><code>userscripts</code></a> module. There are various ways of monitoring the output of your job.</p>
 <h2 id="output-and-error-files">Output and error files<a class="headerlink" href="#output-and-error-files" title="Permanent link">§</a></h2>
 <p>When writing your job script you can either tell it to start in the directory you submit it from (<code>-cwd</code>), or from a particular directory (<code>-wd &lt;dir&gt;</code>), or from your home directory (the default). When your job runs, it will create files in this directory for the job's output and errors:</p>
 <table>

howto/index.html

@@ -2960,7 +2960,8 @@ <h3 id="nodesforjob">nodesforjob<a class="headerlink" href="#nodesforjob" title=
 flat out, and two are mostly doing nothing. Memory use is low. Swap use is essentially zero.</p>
 <h3 id="jobhist">jobhist<a class="headerlink" href="#jobhist" title="Permanent link">§</a></h3>
 <p>Once a job ends, it no longer shows up in <code>qstat</code>. To see information about your finished jobs - 
-when they started, when they ended, what node they ran on - type <code>jobhist</code>.</p>
+when they started, when they ended, what node they ran on - use the command <code>jobhist</code>, part of
+the <a href="../Installed_Software_Lists/module-packages/"><code>userscripts</code></a> module.</p>
 <div class="codehilite"><pre><span></span><code>[uccacxx@login02 ~]$ jobhist
         FSTIME        |       FETIME        |   HOSTNAME    |  OWNER  | JOB NUMBER | TASK NUMBER | EXIT STATUS |   JOB NAME    
 ----------------------+---------------------+---------------+---------+------------+-------------+-------------+---------------