Replace old Gibbs sampler with the experimental one. #343
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Tests | |
| on: | |
| push: | |
| branches: | |
| - master | |
| pull_request: | |
| jobs: | |
| test: | |
| # Use matrix.test.name here to avoid it taking up the entire window width | |
| name: test ${{matrix.test.name}} (${{ matrix.runner.os }}, ${{ matrix.runner.version }}, ${{ matrix.runner.arch }}, ${{ matrix.runner.num_threads }}) | |
| runs-on: ${{ matrix.runner.os }} | |
| continue-on-error: ${{ matrix.runner.version == 'pre' }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| test: | |
| # Run some of the slower test files individually. The last one catches everything | |
| # not included in the others. | |
| - name: "essential/ad" | |
| args: "essential/ad.jl" | |
| - name: "mcmc/gibbs" | |
| args: "mcmc/gibbs.jl" | |
| - name: "mcmc/hmc" | |
| args: "mcmc/hmc.jl" | |
| - name: "mcmc/abstractmcmc" | |
| args: "mcmc/abstractmcmc.jl" | |
| - name: "mcmc/Inference" | |
| args: "mcmc/Inference.jl" | |
| - name: "mcmc/ess" | |
| args: "mcmc/ess.jl" | |
| - name: "everything else" | |
| args: "--skip essential/ad.jl mcmc/gibbs.jl mcmc/hmc.jl mcmc/abstractmcmc.jl mcmc/Inference.jl mcmc/ess.jl" | |
| runner: | |
| # Default | |
| - version: '1' | |
| os: ubuntu-latest | |
| arch: x64 | |
| num_threads: 1 | |
| # x86 | |
| - version: '1' | |
| os: ubuntu-latest | |
| arch: x86 | |
| num_threads: 1 | |
| # Multithreaded | |
| - version: '1' | |
| os: ubuntu-latest | |
| arch: x64 | |
| num_threads: 2 | |
| # Windows | |
| - version: '1' | |
| os: windows-latest | |
| arch: x64 | |
| num_threads: 1 | |
| # macOS | |
| - version: '1' | |
| os: macos-latest | |
| arch: x64 | |
| num_threads: 1 | |
| # Minimum supported Julia version | |
| - version: 'min' | |
| os: ubuntu-latest | |
| arch: x64 | |
| num_threads: 1 | |
| # Minimum supported Julia version, multithreaded | |
| - version: 'min' | |
| os: ubuntu-latest | |
| arch: x64 | |
| num_threads: 2 | |
| # Pre-release Julia version | |
| - version: 'pre' | |
| os: ubuntu-latest | |
| arch: x64 | |
| num_threads: 1 | |
| steps: | |
| - name: Print matrix variables | |
| run: | | |
| echo "OS: ${{ matrix.runner.os }}" | |
| echo "Architecture: ${{ matrix.runner.arch }}" | |
| echo "Julia version: ${{ matrix.runner.version }}" | |
| echo "Number of threads: ${{ matrix.runner.num_threads }}" | |
| echo "Test arguments: ${{ matrix.test.args }}" | |
| - name: (De)activate coverage analysis | |
| run: echo "COVERAGE=${{ matrix.runner.version == '1' && matrix.runner.os == 'ubuntu-latest' && matrix.runner.num_threads == 2 }}" >> "$GITHUB_ENV" | |
| shell: bash | |
| - uses: actions/checkout@v4 | |
| - uses: julia-actions/setup-julia@v2 | |
| with: | |
| version: '${{ matrix.runner.version }}' | |
| arch: ${{ matrix.runner.arch }} | |
| - uses: julia-actions/cache@v2 | |
| - uses: julia-actions/julia-buildpkg@v1 | |
| # TODO: Use julia-actions/julia-runtest when test_args are supported | |
| # Custom calls of Pkg.test tend to miss features such as e.g. adjustments for CompatHelper PRs | |
| # Ref https://github.com/julia-actions/julia-runtest/pull/73 | |
| - name: Call Pkg.test | |
| run: julia --color=yes --inline=yes --depwarn=yes --check-bounds=yes --threads=${{ matrix.runner.num_threads }} --project=@. -e 'import Pkg; Pkg.test(; coverage=parse(Bool, ENV["COVERAGE"]), test_args=ARGS)' -- ${{ matrix.test.args }} | |
| - uses: julia-actions/julia-processcoverage@v1 | |
| if: ${{ env.COVERAGE }} | |
| - uses: codecov/codecov-action@v4 | |
| if: ${{ env.COVERAGE }} | |
| with: | |
| fail_ci_if_error: true | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| file: lcov.info | |
| - uses: coverallsapp/github-action@v2 | |
| if: ${{ env.COVERAGE }} | |
| with: | |
| github-token: ${{ secrets.GITHUB_TOKEN }} | |
| path-to-lcov: lcov.info | |
| flag-name: run-${{ join(matrix.*, '-') }} | |
| parallel: true | |
| finish: | |
| needs: test | |
| if: ${{ always() }} | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Coveralls Finished | |
| uses: coverallsapp/github-action@v2 | |
| with: | |
| parallel-finished: true |