Add spatialdata-experimental-writer Python package - #76
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- Added `pyproject.toml` for package configuration, including dependencies and build system. - Created `README.md` with an overview of the experimental vector optimization writers for SpatialData. - Implemented core functionality in `src/spatialdata_experimental_writer`, including Morton sorting and multiscale Parquet writing. - Developed command-line interface in `cli.py` for various operations on SpatialData. - Introduced Zarr integration for reading and writing points data. - Added tests for key functionalities in `tests/test_points.py` and `tests/test_zarr.py`. - Established package structure with necessary modules and scripts.
- Updated README.md to include detailed installation instructions and command usage for the experimental writer. - Added a new script for benchmarking points index permutations, allowing users to evaluate performance based on index-manifest.json. - Implemented a new CLI command for writing derivative Zarr stores with transcript index sort permutations. - Introduced consolidated metadata registration for points elements in Zarr stores. - Enhanced morton sorting functionality to support custom sort orders and ensure uint columns are not persisted in output Parquet files. - Added integration tests to validate new features and ensure correct functionality across the package.
- Added a new Textual User Interface (TUI) for an interactive workflow, allowing users to execute commands in a guided manner. - Updated `pyproject.toml` to include `textual` as a dependency for TUI functionality. - Update the README with instructions for using the TUI, including command execution and verification checks. - Refactored CLI commands to utilize new runner functions for improved organization and maintainability. - Introduced verification checks for Morton and multiscale parquet outputs to ensure data integrity. - Added unit tests for verification functions to validate their correctness and reliability.
Add InputFormScreen and refactor Existing Screens - Introduced InputFormScreen as a base class for form handling, enabling consistent input navigation and submission across multiple screens. - Refactored ZarrPathScreen, MortonFromZarrScreen, MortonFileScreen, MultiscaleScreen, and IndexPermutationsScreen to inherit from InputFormScreen, streamlining input management. - Implemented action handling for back navigation and primary button submission in the new InputFormScreen. - Enhanced user experience by ensuring focus transitions between input fields based on user input submission.
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✨ Finishing Touches🧪 Generate unit tests (beta)
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Harvested from the larger points-loading branch as a self-contained slice. This package does not touch the TS render path and main never referenced it, so it applied as 8 clean cherry-picks off
main.New Python package
python/spatialdata-experimental-writer(note that we will follow-up at some point by merging image codec writing into this, possibly with a different name, and publish to pypi):morton_code_2d,{feature_key}_codes, controlled row groups, sentinel bbox rows). See ADR 0002.write-index-permutationsbenchmark tooling for comparing sort strategies (spatial Morton vs. feature-primary vs. compound) on a derivative Zarr store.Notes:
uvenv); it was green on the source branch.🤖 Generated with Claude Code