Dose it support PacBio long reads ?

[jjlaisnoopy]

No description provided.

[richardmleggett]

Should be fine - as FASTA files.

[richardmleggett]

Actually, FASTQ should work too!

[jjlaisnoopy]

I got the message:

Collisions:

kmer_filter_255: Unable to process a sequence (too long)

Read xxx_yyy_zzz is longer than the maximum supported length (20000)

Reads with length longer than 20k bp are not supported. Am I right ?

[richardmleggett]

Hi,

Just realised that you are using the old kontaminant, which I had much less to do with.

There is a new version, which I can let you try - if you email me at [email protected]:[email protected].

Otherwise, with the current version, you should be able to increase the maximum supported length by editing the line in include/basic/global.h that is currently:
#define MAX_READ_LENGTH 20000

Thanks,
Richard

On 9 Sep 2016, at 02:20, jjlaisnoopy <[email protected]mailto:[email protected]> wrote:

I got the message:

Collisions:

kmer_filter_255: Unable to process a sequence (too long)

Read xxx_yyy_zzz is longer than the maximum supported length (20000)

Reads with length longer than 20k bp are not supported. Am I right ?

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