chore: new version

SysBioChalmers · Mar 30, 2018 · b8021e3 · b8021e3
1 parent bb5a4cb
commit b8021e3
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Showing 6 changed files with 18 additions and 5 deletions.
diff --git a/.gitignore b/.gitignore
@@ -43,11 +43,9 @@ Thumbs.db
 *.mex*
 *.mlappinstall 
 *.mltbx
-*.mat
 helpsearch*/
 
 # Non-complying tables #
 ########################
 *.xls
-*.xlsx
 *.tab
diff --git a/ModelFiles/mat/yeastGEM.mat b/ModelFiles/mat/yeastGEM.mat
diff --git a/ModelFiles/xlsx/yeastGEM.xlsx b/ModelFiles/xlsx/yeastGEM.xlsx
diff --git a/ModelFiles/xml/yeastGEM.xml b/ModelFiles/xml/yeastGEM.xml
@@ -1,6 +1,6 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <sbml xmlns="http://www.sbml.org/sbml/level3/version1/core" xmlns:fbc="http://www.sbml.org/sbml/level3/version1/fbc/version2" xmlns:groups="http://www.sbml.org/sbml/level3/version1/groups/version1" level="3" version="1" fbc:required="false" groups:required="false">
-  <model metaid="yeastGEM_v7.8.3" id="COBRAModel" name="Model Exported from COBRA Toolbox" fbc:strict="true">
+  <model metaid="yeastGEM_v8.0.0" id="COBRAModel" name="Model Exported from COBRA Toolbox" fbc:strict="true">
     <listOfUnitDefinitions>
       <unitDefinition id="mmol_per_gDW_per_hr">
         <listOfUnits>

diff --git a/history.md b/history.md
@@ -38,4 +38,19 @@ First release of the yeast model
 * started tracking COBRA and RAVEN versions
 * dropped SBML toolbox as requirement
 * reorganized `complementaryScripts`
-* switched to a CC-BY-4.0 license
+* switched to a CC-BY-4.0 license
+
+### yeast 8.0.0:
+First version of the yeast8 model, to separate it from previous versions:
+
+* Manual curation project:
+  * All metabolite information manually curated (names, charges, kegg IDs, chebi IDs)
+  * Reaction gene rules updated with curation from [the iSce926 model](http://www.maranasgroup.com/submission_models/iSce926.htm). 13 genes added in this process
+* Format changes:
+  * Folder `ComplementaryData` introduced
+  * All data is stored in `.tsv` format now (can be navigated in Github)
+  * Releases now come in `.xlsx` as well
+* Other new features:
+  * Added `loadYeastModel.m`
+  * A much smarter `increaseVersion.m`
+  * Lots of refactoring
diff --git a/version.txt b/version.txt
@@ -1 +1 @@
-7.8.3
+8.0.0