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feat: Complex curation and annotation
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,50 +1,46 @@ | ||
| rxnID_yeast_model genes_yeast_model final_GPR | ||
| r_0308 YGL184C ( YFR055W or YGL184C ) | ||
| r_0148 YDR226W ( YDL166C or YDR226W ) | ||
| r_1729 NAN YDL166C | ||
| r_1077 YNR012W ( YDR020C or YNR012W ) | ||
| r_1078 YNR012W ( YDR020C or YNR012W ) | ||
| r_0226 (( Q0080 and Q0085 and Q0130 and YBL099W and YBR039W and YDL004W and YDR298C and YDR322C-A and YDR377W and YJR121W and YKL016C and YLR295C and YML081C-A and YPL078C and YPL271W ) or ( Q0080 and Q0085 and Q0130 and YBL099W and YBR039W and YDL004W and YDR298C and YDR377W and YJR121W and YKL016C and YLR295C and YML081C-A and YPL078C and YPL271W and YPR020W )) (( Q0080 and Q0085 and Q0130 and YBL099W and YBR039W and YDL004W and YDR298C and YDR322C-A and YDR377W and YJR121W and YKL016C and YLR295C and YML081C-A and YPL078C and YPL271W ) or ( Q0080 and Q0085 and Q0130 and YBL099W and YBR039W and YDL004W and YDR298C and YDR377W and YJR121W and YKL016C and YLR295C and YML081C-A and YPL078C and YPL271W and YPR020W ) or ( Q0080 and Q0085 and Q0130 and YBL099W and YBR039W and YDL004W and YDR298C and YDR322C-A and YDR377W and YJR121W and YKL016C and YLR295C and YML081C-A and YPL078C and YPL271W and YJL180C and YLR393W and YNL315C and YOL077W-A and YCL005W-A)) | ||
| r_0364 YBR252W ( YJR069C or YBR252W ) | ||
| r_0815 YAL012W ( YLL058W or YML082W or YAL012W ) | ||
| r_0448 YJL155C ( YLR345W or YJL155C ) | ||
| r_0534 ( YCL040W or YFR053C or YGL253W ) ( YLR446W or YCL040W or YFR053C or YGL253W ) | ||
| r_0533 ( YFR053C or YGL253W ) ( YLR446W or YFR053C or YGL253W ) | ||
| r_0535 ( YFR053C or YGL253W ) ( YLR446W or YFR053C or YGL253W ) | ||
| r_0477 YKL104C ( YMR084W or YKL104C ) | ||
| r_2116 ( YMR170C or YER073W or YOR374W ) ( YMR110C or YMR170C or YER073W or YOR374W ) | ||
| r_0172 ( YMR169C or YMR170C ) ( YMR110C or YMR169C or YMR170C ) | ||
| r_0483 ( YBR244W or YCL035C or YDR513W or YIR037W or YKL026C ) ( YNL229C or YBR244W or YCL035C or YDR513W or YIR037W or YKL026C ) | ||
| r_2025 NAN YNR027W | ||
| r_1185 YBR293W ( YOL092W or YBR293W ) | ||
| r_1200 ( YBR293W or YCL069W or YMR088C ) ( YOL092W or YBR293W or YCL069W or YMR088C ) | ||
| r_1212 ( YBR293W or YCL069W or YMR088C ) ( YOL092W or YBR293W or YCL069W or YMR088C ) | ||
| r_0366 ( YGR254W or YHR174W ) ( YPL281C or YGR254W or YHR174W or YMR323W or YOR393W) | ||
| r_1805 NAN ( YBR241C or YGL104C ) | ||
| r_0783 YLR328W ( YCL047C or YLR328W ) | ||
| r_0530 ( YDR376W and YPL252C ) ( YER141W or (YDR376W and YPL252C) ) | ||
| r_1084 YKL035W ( YHL012W or YKL035W ) | ||
| r_0475 NAN YFL060C | ||
| r_4049 NAN ( YBL035C or YBR278W or YCR014C or YIR008C or YKL045W or YDL102W or YDL164C or YDR121W or YDR419W or YJR006W or YJR043C or YNL102W or YNL262W or YOR330C or YPL167C or YPR175W or YKR002W ) | ||
| r_4050 NAN ( YBR154C or YHR143W-A or YIL021W or YKL144C or YKR025W or YFL036W or YDL140C or YDL150W or YDR045C or YDR156W or YDR404C or YGL070C or YJL011C or YJL140W or YJL148W or YJR063W or YNL113W or YNL151C or YNL248C or YNR003C or YOL005C or YOR116C or YOR151C or YOR207C or YOR210W or YOR224C or YOR340C or YOR341W or YPR010C or YPR110C or YPR187W or YPR190C ) | ||
| r_0438 (( Q0045 and Q0250 and Q0275 and YDL067C and YEL039C and YGL187C and YGL191W and YHR051W and YIL111W and YLR038C and YLR395C and YMR256C ) or ( Q0045 and Q0250 and Q0275 and YDL067C and YEL039C and YGL187C and YGL191W and YHR051W and YLR038C and YLR395C and YMR256C and YNL052W ) or ( Q0045 and Q0250 and Q0275 and YDL067C and YGL187C and YGL191W and YHR051W and YIL111W and YJR048W and YLR038C and YLR395C and YMR256C ) or ( Q0045 and Q0250 and Q0275 and YDL067C and YGL187C and YGL191W and YHR051W and YJR048W and YLR038C and YLR395C and YMR256C and YNL052W )) (( Q0045 and Q0250 and Q0275 and YDL067C and YEL039C and YGL187C and YGL191W and YHR051W and YIL111W and YLR038C and YLR395C and YMR256C ) or ( Q0045 and Q0250 and Q0275 and YDL067C and YEL039C and YGL187C and YGL191W and YHR051W and YLR038C and YLR395C and YMR256C and YNL052W ) or ( Q0045 and Q0250 and Q0275 and YDL067C and YGL187C and YGL191W and YHR051W and YIL111W and YJR048W and YLR038C and YLR395C and YMR256C ) or ( Q0045 and Q0250 and Q0275 and YDL067C and YGL187C and YGL191W and YHR051W and YJR048W and YLR038C and YLR395C and YMR256C and YNL052W ) or (Q0045 and Q0250 and Q0275 and YDL067C and YHR116W and YDR231C and YGR062C and YJL003W and YPL132W and YLL018C-A)) | ||
| r_1166 ( YDL245C or YDL247W or YDR342C or YDR343C or YDR345C or YDR536W or YEL069C or YFL011W or YHR092C or YHR094C or YHR096C or YJL214W or YJL219W or YJR158W or YJR160C or YLR081W or YMR011W or YNR072W or YOL156W ) ( YDL245C or YDL247W or YDR342C or YDR343C or YDR345C or YDR536W or YEL069C or YFL011W or YHR092C or YHR094C or YHR096C or YJL214W or YJL219W or YJR158W or YJR160C or YLR081W or YMR011W or YNR072W or YOL156W or YDR387C ) | ||
| r_3264 ( YBR204C or YKR089C or YMR313C or YOR081C ) ( YBR204C or YKR089C or YMR313C or YOR081C or YCR068W ) | ||
| r_3297 YMR313C ( YCR068W or YMR313C ) | ||
| r_0804 YER005W ( YAL035W or YLL001W or YER005W ) | ||
| r_1667 NAN YNL036W | ||
| r_0005 ( YGR032W or ( YLR342W and YCR034W )) ( YGR032W or YMR306W or ( YLR342W and YCR034W )) | ||
| r_1172 YLL043W ( YFL054C or YLL043W ) | ||
| r_1217 YDR105C ( YCL025C or YDR508C or YFL055W or YKR039W or YPL265W or YDR105C ) | ||
| r_1258 YLR138W ( YDR456W or YLR138W) | ||
| r_1249 YJL129C ( YDR456W or YJL129C ) | ||
| r_0193 YPR026W ( YPR026W or YBR001C ) | ||
| r_2064 NAN YDL024C | ||
| r_0323 YJR159W ( YDL246C or YJR159W ) | ||
| r_0199 YMR293C ( YDR242W or YMR293C ) | ||
| r_0139 YML022W ( YDR441C or YML022W) | ||
| r_0542 YDR234W ( YJL200C or YDR234W ) | ||
| r_0893 YKL152C ( YOR283W or YKL152C ) | ||
| r_1048 YLR354C ( YGR043C or YLR354C ) | ||
| r_1021 (YDR178W and YJL045W and YKL141W and YLL041C) or (YDR178W and YKL141W and YKL148C and YLL041C) (YDR178W and YJL045W and YKL141W and YLL041C) or (YDR178W and YKL141W and YKL148C and YLL041C) or ( YLR164W and YJL045W and YKL141W and YLL041C) | ||
| r_0475 YFL060C ( YFL060C or YNL334C ) | ||
| r_0005 YGR032W or YMR306W or (YLR342W and YCR034W) ( YPR165W and YLR342W ) or ( YPR165W and YGR032W ) or ( YPR165W and YMR306W ) | ||
| r_0021 YDR204W and YGL119W and YGR255C and YLR201C and YML110C and YOL096C and YOR125C YDR204W and YGR255C and YLR201C and YML110C and YOL096C and YOR125C | ||
| r_0022 YDR204W and YGL119W and YGR255C and YLR201C and YML110C and YOL096C and YOR125C YDR204W and YGR255C and YLR201C and YML110C and YOL096C and YOR125C | ||
| r_0263 ( YHL003C and YMR298W ) or ( YKL008C and YMR298W ) YKL008C and YHL003C and YMR298W | ||
| r_0264 ( YHL003C and YMR298W ) or ( YKL008C and YMR298W ) YKL008C and YHL003C and YMR298W | ||
| r_0265 ( YHL003C and YMR298W ) or ( YKL008C and YMR298W ) YKL008C and YHL003C and YMR298W | ||
| r_0266 ( YHL003C and YMR298W ) or ( YKL008C and YMR298W ) YKL008C and YHL003C and YMR298W | ||
| r_0532 YDR204W and YGL119W and YGR255C and YLR201C and YML110C and YOL096C and YOR125C YDR204W and YGR255C and YLR201C and YML110C and YOL096C and YOR125C | ||
| r_0831 YDR148C and YFL018C and YIL125W ( YDR148C and YFL018C and YIL125W and YFR049W ) or ( YDR148C and YFL018C and YIL125W ) | ||
| r_0832 YDR148C and YFL018C and YIL125W ( YDR148C and YFL018C and YIL125W and YFR049W ) or ( YDR148C and YFL018C and YIL125W ) | ||
| r_0852 YDR148C and YFL018C and YIL125W ( YFL022C and YLR060W ) | ||
| r_0906 ( YKL088W and YKR072C and YOR054C ) or ( YKL088W and YKR072C ) or ( YKL088W and YOR054C ) or YKL088W YKL088W and YKR072C and YOR054C | ||
| r_0943 YDR400W and YLR017W and YLR209C YLR209C | ||
| r_0963 YDR204W and YGL119W and YGR255C and YLR201C and YML110C and YOL096C and YOR125C YDR204W and YGR255C and YLR201C and YML110C and YOL096C and YOR126C | ||
| r_0985 YDR204W and YGL119W and YGR255C and YLR201C and YML110C and YOL096C and YOR125C YDR204W and YGR255C and YLR201C and YML110C and YOL096C and YOR126C | ||
| r_0992 ( YDL040C and YGR147C and YHR013C ) or ( YDL040C and YGR147C ) YHR013C and YDL040C and YOR253W | ||
| r_0993 ( YBR058C-A and YDR062W and YMR296C ) or ( YDR062W and YMR296C ) YMR296C and YKL212W and YDR062W and YGR038W and YLR350W and YBR058C-A | ||
| r_2852 YBR097W and YLR240W ( YBR097W and YLR240W ) or ( YBR097W and YLR240W and YPL120W and YLR360W ) or ( YBR097W and YLR240W and YBR128C and YPL120W and YLR211C ) | ||
| r_2853 YBR097W and YLR240W ( YBR097W and YLR240W ) or ( YBR097W and YLR240W and YPL120W and YLR360W ) or ( YBR097W and YLR240W and YBR128C and YPL120W and YLR211C ) | ||
| r_2854 YBR097W and YLR240W ( YBR097W and YLR240W ) or ( YBR097W and YLR240W and YPL120W and YLR360W ) or ( YBR097W and YLR240W and YBR128C and YPL120W and YLR211C ) | ||
| r_2855 YBR097W and YLR240W ( YBR097W and YLR240W ) or ( YBR097W and YLR240W and YPL120W and YLR360W ) or ( YBR097W and YLR240W and YBR128C and YPL120W and YLR211C ) | ||
| r_2856 YBR097W and YLR240W ( YBR097W and YLR240W ) or ( YBR097W and YLR240W and YPL120W and YLR360W ) or ( YBR097W and YLR240W and YBR128C and YPL120W and YLR211C ) | ||
| r_2857 YBR097W and YLR240W ( YBR097W and YLR240W ) or ( YBR097W and YLR240W and YPL120W and YLR360W ) or ( YBR097W and YLR240W and YBR128C and YPL120W and YLR211C ) | ||
| r_2858 YBR097W and YLR240W ( YBR097W and YLR240W ) or ( YBR097W and YLR240W and YPL120W and YLR360W ) or ( YBR097W and YLR240W and YBR128C and YPL120W and YLR211C ) | ||
| r_2859 YBR097W and YLR240W ( YBR097W and YLR240W ) or ( YBR097W and YLR240W and YPL120W and YLR360W ) or ( YBR097W and YLR240W and YBR128C and YPL120W and YLR211C ) | ||
| r_3216 YLR386W and YNL325C YFR019W and YNL325C and YFR021W and YNL054W and YLR386W | ||
| r_3217 YLR386W and YNL325C YFR019W and YNL325C and YFR021W and YNL054W and YLR386W | ||
| r_3218 YLR386W and YNL325C YFR019W and YNL325C and YFR021W and YNL054W and YLR386W | ||
| r_3219 YLR386W and YNL325C YFR019W and YNL325C and YFR021W and YNL054W and YLR386W | ||
| r_3220 YLR386W and YNL325C YFR019W and YNL325C and YFR021W and YNL054W and YLR386W | ||
| r_3221 YLR386W and YNL325C YFR019W and YNL325C and YFR021W and YNL054W and YLR386W | ||
| r_3222 YLR386W and YNL325C YFR019W and YNL325C and YFR021W and YNL054W and YLR386W | ||
| r_3223 YLR386W and YNL325C YFR019W and YNL325C and YFR021W and YNL054W and YLR386W | ||
| r_1085 YBR127C and YDL185W and YEL027W and YEL051W and YGR020C and YHR026W and YHR039C-A and YKL080W and YLR447C and YMR054W and YOR332W and YPL234C and YPR036W ( YPR170W-B and YBR127C and YDL185W and YOR332W and YHR026W and YEL027W and YKL080W and YLR447C and YEL051W and YPL234C and YMR054W and YGR020C and YPR036W and YHR039C-A and YGR106C and YCL005W-A ) or ( YBR127C and YDL185W and YOR332W and YHR026W and YEL027W and YKL080W and YLR447C and YEL051W and YPL234C and YMR054W and YGR020C and YPR036W and YHR039C-A and YGR106C and YCL005W-A ) | ||
| r_1086 YBR127C and YDL185W and YEL027W and YEL051W and YGR020C and YHR026W and YHR039C-A and YKL080W and YLR447C and YOR270C and YOR332W and YPL234C and YPR036W ( YBR127C and YDL185W and YEL027W and YEL051W and YGR020C and YHR026W and YHR039C-A and YKL080W and YLR447C and YOR270C and YOR332W and YPL234C and YPR036W and YPR170W-B and YGR106C and YCL005W-A ) or ( YBR127C and YDL185W and YEL027W and YEL051W and YGR020C and YHR026W and YHR039C-A and YKL080W and YLR447C and YOR270C and YOR332W and YPL234C and YPR036W and YGR106C and YCL005W-A ) | ||
| r_0886 YMR205C or ( YGR240C and YMR205C ) YGR240C and YMR205C | ||
| r_0887 YMR205C or ( YGR240C and YMR205C ) YGR240C and YMR205C | ||
| r_2836 YDR373W and YNL267W ( YDR373W and YNL267W ) or ( YDR373W and YNL267W and YJL100W ) | ||
| r_2837 YDR373W and YNL267W ( YDR373W and YNL267W ) or ( YDR373W and YNL267W and YJL100W ) | ||
| r_2838 YDR373W and YNL267W ( YDR373W and YNL267W ) or ( YDR373W and YNL267W and YJL100W ) | ||
| r_2839 YDR373W and YNL267W ( YDR373W and YNL267W ) or ( YDR373W and YNL267W and YJL100W ) | ||
| r_2840 YDR373W and YNL267W ( YDR373W and YNL267W ) or ( YDR373W and YNL267W and YJL100W ) | ||
| r_2841 YDR373W and YNL267W ( YDR373W and YNL267W ) or ( YDR373W and YNL267W and YJL100W ) | ||
| r_2842 YDR373W and YNL267W ( YDR373W and YNL267W ) or ( YDR373W and YNL267W and YJL100W ) | ||
| r_2843 YDR373W and YNL267W ( YDR373W and YNL267W ) or ( YDR373W and YNL267W and YJL100W ) |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,7 +1,7 @@ | ||
| MATLAB 9.10.0.1602886 (R2021a) | ||
| MATLAB 9.11.0.1769968 (R2021b) | ||
| libSBML 5.17.0 | ||
| RAVEN_toolbox 2.5.1 | ||
| COBRA_toolbox commit 25dbea4 | ||
| RAVEN_toolbox 2.5.3 | ||
| COBRA_toolbox unknown | ||
| SBML_level 3 | ||
| SBML_version 1 | ||
| fbc_version 2 |
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