chore: new version

SysBioChalmers · May 14, 2018 · 2b46934 · 2b46934
1 parent 4f225db
commit 2b46934
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Showing 6 changed files with 14 additions and 3 deletions.
diff --git a/ModelFiles/dependencies.txt b/ModelFiles/dependencies.txt
@@ -1,7 +1,7 @@
 MATLAB	9.4.0.813654 (R2018a)
 libSBML	5.16.0
 RAVEN_toolbox	2.0.0-rc.1.1
-COBRA_toolbox	commit 29dd0d3
+COBRA_toolbox	commit 5052f08
 SBML_level	3
 SBML_version	1
 fbc_version	2
diff --git a/ModelFiles/mat/yeastGEM.mat b/ModelFiles/mat/yeastGEM.mat
diff --git a/ModelFiles/xlsx/yeastGEM.xlsx b/ModelFiles/xlsx/yeastGEM.xlsx
diff --git a/ModelFiles/xml/yeastGEM.xml b/ModelFiles/xml/yeastGEM.xml
@@ -1,6 +1,6 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <sbml xmlns="http://www.sbml.org/sbml/level3/version1/core" xmlns:fbc="http://www.sbml.org/sbml/level3/version1/fbc/version2" xmlns:groups="http://www.sbml.org/sbml/level3/version1/groups/version1" level="3" version="1" fbc:required="false" groups:required="false">
-  <model metaid="yeastGEM_v8.0.1" id="COBRAModel" name="Model Exported from COBRA Toolbox" fbc:strict="true">
+  <model metaid="yeastGEM_v8.0.2" id="COBRAModel" name="Model Exported from COBRA Toolbox" fbc:strict="true">
     <listOfUnitDefinitions>
       <unitDefinition id="mmol_per_gDW_per_hr">
         <listOfUnits>

diff --git a/history.md b/history.md
@@ -1,5 +1,16 @@
 # History
 
+### yeast 8.0.2:
+* New features:
+  * Model can now be used with cobrapy by running `loadYeastModel.py`
+  * `loadYeastModel.m` now adds the `rxnGeneMat` field to the model
+* Refactoring:
+  * Moved `pmids` of model from `rxnNotes` to `rxnReferences` (COBRA-compliant)
+  * `yeastGEM.yml` and `dependencies.txt` are now updated by RAVEN (a few dependencies added)
+  * Moved `boundaryMets.txt` and `dependencies.txt` to the `ModelFiles` folder
+* Documentation:
+  * Added badges and adapted README ro reflect new features
+
 ### yeast 8.0.1:
 * `.yml` format included for easier visualization of model changes
 * Empty notes removed from model

diff --git a/version.txt b/version.txt
@@ -1 +1 @@
-8.0.1
+8.0.2