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Merge pull request #251 from SysBioChalmers/fix/gluconeogenesis
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fix: combine glycolysis + gluconeogenesis
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@BenjaSanchez
BenjaSanchez authored Oct 6, 2020
2 parents 6094f32 + da3d35e commit 27350d4
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Showing 4 changed files with 181 additions and 347 deletions.
20 changes: 10 additions & 10 deletions ComplementaryData/modelCuration/FAEnewRxnProp.tsv
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Original file line number Diff line number Diff line change
Expand Up @@ -22,33 +22,33 @@ r_4648 0 ethyl decanoate exchange
r_4649 0 (YGR015C) mitochondrial ethanol O-acetyltransferase 2.3.1.268 R11957
r_4650 0 ethyl acetate transport, mitochondrial
r_4651 0 (YGR087C or YLR044C or YLR134W) pyruvate decarboxylase (aldedyde-forming) 4.1.1.1 R00636
r_4652 0 (YBR145W or YDL168W or YOL086C) aldehyde dehydrogenase (1-propanol, NAD) 1.1.1.-; 1.1.1.1; 1.1.1.284 Gluconeogenesis;sce00010 Glycolysis;sce00071 Fatty acid degradation;sce00350 Tyrosine metabolism;sce01110 Biosynthesis of secondary metabolites;sce01130 Biosynthesis of antibiotics R00754
r_4653 0 (YGL256W or YMR083W) aldehyde dehydrogenase (1-propanol, NAD) 1.1.1.1 Gluconeogenesis;sce00010 Glycolysis;sce00071 Fatty acid degradation;sce00350 Tyrosine metabolism;sce01110 Biosynthesis of secondary metabolites;sce01130 Biosynthesis of antibiotics
r_4654 0 (YCR105W or YDR368W or YMR318C) aldehyde dehydrogenase (1-propanol, NADP) 1.1.1.-; 1.1.1.2 Gluconeogenesis;sce00010 Glycolysis;sce00071 Fatty acid degradation;sce00350 Tyrosine metabolism;sce01110 Biosynthesis of secondary metabolites;sce01130 Biosynthesis of antibiotics
r_4652 0 (YBR145W or YDL168W or YOL086C) aldehyde dehydrogenase (1-propanol, NAD) 1.1.1.-; 1.1.1.1; 1.1.1.284 sce00010 Glycolysis / Gluconeogenesis;sce00071 Fatty acid degradation;sce00350 Tyrosine metabolism;sce01110 Biosynthesis of secondary metabolites;sce01130 Biosynthesis of antibiotics R00754
r_4653 0 (YGL256W or YMR083W) aldehyde dehydrogenase (1-propanol, NAD) 1.1.1.1 sce00010 Glycolysis / Gluconeogenesis;sce00071 Fatty acid degradation;sce00350 Tyrosine metabolism;sce01110 Biosynthesis of secondary metabolites;sce01130 Biosynthesis of antibiotics
r_4654 0 (YCR105W or YDR368W or YMR318C) aldehyde dehydrogenase (1-propanol, NADP) 1.1.1.-; 1.1.1.2 sce00010 Glycolysis / Gluconeogenesis;sce00071 Fatty acid degradation;sce00350 Tyrosine metabolism;sce01110 Biosynthesis of secondary metabolites;sce01130 Biosynthesis of antibiotics
r_4655 1 1-propyl alcohol transport, mitochondrial
r_4656 1 propanal transport, cytosol
r_4657 1 1-propyl alcohol transport, cytosol
r_4658 0 propanal exchange
r_4659 0 propanol exchange
r_4660 1 (YHR137W) 2-oxo acid decarboxylase 4.1.1.1 R00636
r_4661 0 (YBR145W or YDL168W or YOL086C) aldehyde dehydrogenase (methionol, NAD) 1.1.1.-; 1.1.1.1; 1.1.1.284 Gluconeogenesis;sce00010 Glycolysis;sce00071 Fatty acid degradation;sce00350 Tyrosine metabolism;sce01110 Biosynthesis of secondary metabolites;sce01130 Biosynthesis of antibiotics R00754
r_4662 0 (YGL256W or YMR083W) aldehyde dehydrogenase (methionol, NAD) 1.1.1.1 Gluconeogenesis;sce00010 Glycolysis;sce00071 Fatty acid degradation;sce00350 Tyrosine metabolism;sce01110 Biosynthesis of secondary metabolites;sce01130 Biosynthesis of antibiotics
r_4663 0 (YCR105W or YDR368W or YMR318C) aldehyde dehydrogenase (methionol, NADP) 1.1.1.-; 1.1.1.2 Gluconeogenesis;sce00010 Glycolysis;sce00071 Fatty acid degradation;sce00350 Tyrosine metabolism;sce01110 Biosynthesis of secondary metabolites;sce01130 Biosynthesis of antibiotics
r_4661 0 (YBR145W or YDL168W or YOL086C) aldehyde dehydrogenase (methionol, NAD) 1.1.1.-; 1.1.1.1; 1.1.1.284 sce00010 Glycolysis / Gluconeogenesis;sce00071 Fatty acid degradation;sce00350 Tyrosine metabolism;sce01110 Biosynthesis of secondary metabolites;sce01130 Biosynthesis of antibiotics R00754
r_4662 0 (YGL256W or YMR083W) aldehyde dehydrogenase (methionol, NAD) 1.1.1.1 sce00010 Glycolysis / Gluconeogenesis;sce00071 Fatty acid degradation;sce00350 Tyrosine metabolism;sce01110 Biosynthesis of secondary metabolites;sce01130 Biosynthesis of antibiotics
r_4663 0 (YCR105W or YDR368W or YMR318C) aldehyde dehydrogenase (methionol, NADP) 1.1.1.-; 1.1.1.2 sce00010 Glycolysis / Gluconeogenesis;sce00071 Fatty acid degradation;sce00350 Tyrosine metabolism;sce01110 Biosynthesis of secondary metabolites;sce01130 Biosynthesis of antibiotics
r_4664 1 methionol transport, mitochondrial
r_4665 1 methional transport, cytosol
r_4666 1 methionol transport, cytosol
r_4667 0 methional exchange
r_4668 0 methionol exchange
r_4669 0 (YGR087C or YLR044C or YLR134W) pyruvate decarboxylase (hydroxy-phenyl) 4.1.1.1
r_4670 0 (YBR145W or YDL168W or YOL086C) aldehyde dehydrogenase (tyrosol, NAD) 1.1.1.-; 1.1.1.1; 1.1.1.284 Gluconeogenesis;sce00010 Glycolysis;sce00071 Fatty acid degradation;sce00350 Tyrosine metabolism;sce01110 Biosynthesis of secondary metabolites;sce01130 Biosynthesis of antibiotics
r_4671 0 (YGL256W or YMR083W) aldehyde dehydrogenase (tyrosol, NAD) 1.1.1.1 Gluconeogenesis;sce00010 Glycolysis;sce00071 Fatty acid degradation;sce00350 Tyrosine metabolism;sce01110 Biosynthesis of secondary metabolites;sce01130 Biosynthesis of antibiotics
r_4672 0 (YCR105W or YDR368W or YMR318C) aldehyde dehydrogenase (tyrosol, NADP) 1.1.1.-; 1.1.1.2 Gluconeogenesis;sce00010 Glycolysis;sce00071 Fatty acid degradation;sce00350 Tyrosine metabolism;sce01110 Biosynthesis of secondary metabolites;sce01130 Biosynthesis of antibiotics
r_4670 0 (YBR145W or YDL168W or YOL086C) aldehyde dehydrogenase (tyrosol, NAD) 1.1.1.-; 1.1.1.1; 1.1.1.284 sce00010 Glycolysis / Gluconeogenesis;sce00071 Fatty acid degradation;sce00350 Tyrosine metabolism;sce01110 Biosynthesis of secondary metabolites;sce01130 Biosynthesis of antibiotics
r_4671 0 (YGL256W or YMR083W) aldehyde dehydrogenase (tyrosol, NAD) 1.1.1.1 sce00010 Glycolysis / Gluconeogenesis;sce00071 Fatty acid degradation;sce00350 Tyrosine metabolism;sce01110 Biosynthesis of secondary metabolites;sce01130 Biosynthesis of antibiotics
r_4672 0 (YCR105W or YDR368W or YMR318C) aldehyde dehydrogenase (tyrosol, NADP) 1.1.1.-; 1.1.1.2 sce00010 Glycolysis / Gluconeogenesis;sce00071 Fatty acid degradation;sce00350 Tyrosine metabolism;sce01110 Biosynthesis of secondary metabolites;sce01130 Biosynthesis of antibiotics
r_4673 1 tyrosol transport, mitochondrial
r_4674 1 (4-hydroxyphenyl)acetaldehyde transport, cytosol
r_4675 1 tyrosol transport, cytosol
r_4676 0 (4-hydroxyphenyl)acetaldehyde exchange
r_4677 0 tyrosol exchange
r_4678 1 (YMR170C or YMR169C or YOR374W) aldehyde dehydrogenase 1.2.1.5 Gluconeogenesis;sce00010 Glycolysis;sce00071 Fatty acid degradation;sce00350 Tyrosine metabolism;sce01110 Biosynthesis of secondary metabolites;sce01130 Biosynthesis of antibiotics
r_4678 1 (YMR170C or YMR169C or YOR374W) aldehyde dehydrogenase 1.2.1.5 sce00010 Glycolysis / Gluconeogenesis;sce00071 Fatty acid degradation;sce00350 Tyrosine metabolism;sce01110 Biosynthesis of secondary metabolites;sce01130 Biosynthesis of antibiotics
r_4679 1 (YOR317W or YER015W or YIL009W or YMR246W) short-chain-fatty-acid-CoA ligase (propionate) 6.2.1.3 sce00061 Fatty acid biosynthesis;sce00071 Fatty acid degradation;sce01212 Fatty acid metabolism;sce04146 Peroxisome
r_4680 1 (YBR177C or YPL095C) alcohol acyltransferase (propionyl-CoA) 2.3.1.84
r_4681 1 propionyl-CoA transport, mitochondrial
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